Click here to switch to the map view.

The map label for this gene is yfcH [C]

Identifier: 119716529

GI number: 119716529

Start: 2451292

End: 2452188

Strand: Reverse

Name: yfcH [C]

Synonym: Noca_2302

Alternate gene names: 119716529

Gene position: 2452188-2451292 (Counterclockwise)

Preceding gene: 119716530

Following gene: 119716527

Centisome position: 49.18

GC content: 75.59

Gene sequence:

>897_bases
ATGTCGCTGACCGTCGTCATCGCCGGCGCCTCCGGCTTCCTCGGCACCCACCTGAGCCGGGAGCTGACCGAGCGCGGCCA
CGACGTGGTCGCGCTGGTGCGCCGGCCCACGTCGTCGCCGAGCGAGTCGACGTGGGACCCGTACGCCGGCGGCTACGACC
GCGAGCTGGTCGAGCGCGCCGACGTGGTGGTCAACCTGGCGGGGTCGCCGACGATCGGCAACCCGCACTCGCGCCGCTGG
GCCCGCGCGCTGCGCGAGAGCCGGGTGACCACGACCCGGGTGCTCGCGAGCGCCATCGCCGCGAGCGAGCGGAAGCCGGC
CTTCGTCGCCGGGAACGCGATCGCCTGGTACGGCGACCACGGCGAGCAGGTCGTCACCGAGGAGACCCAGAGCAGCGGCG
ACAGCCTGCTCACCCGCGTCAGCCGCGAGTGGCAGGATGCCGCCGACCCGGCCGCGGCGGCCGGCGCCCGGCTGTGCGTG
CTGCGCACCGCCCCGGTGATGGACCGACGGGCGGCGCCGCTCAAGCAGCTGCAGCTGCTCACCCGGCTCGGGCTGGGCGC
TCGGCTCGGAGACGGACGACAGCGGATGGCGATGATCTCCCTGCGCGACTGGGTCGGCGGCGTCACCCACCTGGTGGAGC
ACGAGACGGCCGCCGGCCCGTTCAACGTGTGCTGCCCGCTGACGCCGACCAACGCGGAGTTCACCCAGGCGCTGGCCCGG
GCCACCCACCGCAAGGCGTTCCTGGTCGCCCCGCGGTTCGCGATCCGGGCCGGCGCCGGCCCGCTCGCCCCCGAGGCGCT
CGGCTCGATCAACCTGCGCCCCGCGGCCCTCGAGGACGCGGGCTACCGGTTCCACGACCGCACGGTGGACGACGTGCTCG
GCGCGGGCCTGACCTGA

Upstream 100 bases:

>100_bases
ACCTACGACCACCAGCTGGTCGACGGCGCCGACGCAGGCCGTTTCCTCACCGACGTGAAGCAGCGCCTGGAGTCGGGCCA
GTTCGAGGTCTGAGGAGAGC

Downstream 100 bases:

>100_bases
GCCATCCGCCACTCCCCCGCGGCCCGCACCAGCACGAGGCGCCGGGTCGATACCGCGTCGCGCGGCAGCGGGCGGCGTAC
GCCGGCGCCGACCGCGACCG

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSLTVVIAGASGFLGTHLSRELTERGHDVVALVRRPTSSPSESTWDPYAGGYDRELVERADVVVNLAGSPTIGNPHSRRW
ARALRESRVTTTRVLASAIAASERKPAFVAGNAIAWYGDHGEQVVTEETQSSGDSLLTRVSREWQDAADPAAAAGARLCV
LRTAPVMDRRAAPLKQLQLLTRLGLGARLGDGRQRMAMISLRDWVGGVTHLVEHETAAGPFNVCCPLTPTNAEFTQALAR
ATHRKAFLVAPRFAIRAGAGPLAPEALGSINLRPAALEDAGYRFHDRTVDDVLGAGLT

Sequences:

>Translated_298_residues
MSLTVVIAGASGFLGTHLSRELTERGHDVVALVRRPTSSPSESTWDPYAGGYDRELVERADVVVNLAGSPTIGNPHSRRW
ARALRESRVTTTRVLASAIAASERKPAFVAGNAIAWYGDHGEQVVTEETQSSGDSLLTRVSREWQDAADPAAAAGARLCV
LRTAPVMDRRAAPLKQLQLLTRLGLGARLGDGRQRMAMISLRDWVGGVTHLVEHETAAGPFNVCCPLTPTNAEFTQALAR
ATHRKAFLVAPRFAIRAGAGPLAPEALGSINLRPAALEDAGYRFHDRTVDDVLGAGLT
>Mature_297_residues
SLTVVIAGASGFLGTHLSRELTERGHDVVALVRRPTSSPSESTWDPYAGGYDRELVERADVVVNLAGSPTIGNPHSRRWA
RALRESRVTTTRVLASAIAASERKPAFVAGNAIAWYGDHGEQVVTEETQSSGDSLLTRVSREWQDAADPAAAAGARLCVL
RTAPVMDRRAAPLKQLQLLTRLGLGARLGDGRQRMAMISLRDWVGGVTHLVEHETAAGPFNVCCPLTPTNAEFTQALARA
THRKAFLVAPRFAIRAGAGPLAPEALGSINLRPAALEDAGYRFHDRTVDDVLGAGLT

Specific function: Unknown

COG id: COG1090

COG function: function code R; Predicted nucleoside-diphosphate sugar epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family. SDR39U1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116812630, Length=260, Percent_Identity=32.3076923076923, Blast_Score=115, Evalue=4e-26,
Organism=Escherichia coli, GI1788642, Length=297, Percent_Identity=33.3333333333333, Blast_Score=150, Evalue=1e-37,
Organism=Drosophila melanogaster, GI28573846, Length=298, Percent_Identity=27.5167785234899, Blast_Score=129, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013549
- InterPro:   IPR001509
- InterPro:   IPR016040
- InterPro:   IPR010099 [H]

Pfam domain/function: PF08338 DUF1731; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 31870; Mature: 31739

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTVVIAGASGFLGTHLSRELTERGHDVVALVRRPTSSPSESTWDPYAGGYDRELVERA
CEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
DVVVNLAGSPTIGNPHSRRWARALRESRVTTTRVLASAIAASERKPAFVAGNAIAWYGDH
CEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCEEEEECCC
GEQVVTEETQSSGDSLLTRVSREWQDAADPAAAAGARLCVLRTAPVMDRRAAPLKQLQLL
CCEEHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
TRLGLGARLGDGRQRMAMISLRDWVGGVTHLVEHETAAGPFNVCCPLTPTNAEFTQALAR
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHH
ATHRKAFLVAPRFAIRAGAGPLAPEALGSINLRPAALEDAGYRFHDRTVDDVLGAGLT
HHHCCEEEECCHHHEECCCCCCCHHHHCCCCCCCCHHHCCCCEECCCCHHHHHCCCCC
>Mature Secondary Structure 
SLTVVIAGASGFLGTHLSRELTERGHDVVALVRRPTSSPSESTWDPYAGGYDRELVERA
EEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHH
DVVVNLAGSPTIGNPHSRRWARALRESRVTTTRVLASAIAASERKPAFVAGNAIAWYGDH
CEEEECCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCEEEEECCC
GEQVVTEETQSSGDSLLTRVSREWQDAADPAAAAGARLCVLRTAPVMDRRAAPLKQLQLL
CCEEHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH
TRLGLGARLGDGRQRMAMISLRDWVGGVTHLVEHETAAGPFNVCCPLTPTNAEFTQALAR
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHH
ATHRKAFLVAPRFAIRAGAGPLAPEALGSINLRPAALEDAGYRFHDRTVDDVLGAGLT
HHHCCEEEECCHHHEECCCCCCCHHHHCCCCCCCCHHHCCCCEECCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]