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The map label for this gene is yciO [H]

Identifier: 119715316

GI number: 119715316

Start: 1135392

End: 1136018

Strand: Direct

Name: yciO [H]

Synonym: Noca_1076

Alternate gene names: 119715316

Gene position: 1135392-1136018 (Clockwise)

Preceding gene: 119715315

Following gene: 119715319

Centisome position: 22.77

GC content: 70.65

Gene sequence:

>627_bases
ATGGCCCGCTACGTCGACGTACACCCCGAGAACCCCCAGTCCCGCCTGCTCGACCAGATCGCCGACGCGCTGCGCGAGGA
CCAGCTGATCGCCTACCCGACCGACTCGGGCTACGCGCTCGGCTGCCGGCTCGGCAACCGCGAGGGTCGGGACCGGATCC
TGCGGATCCGCCGGCTCGACGAGAAGCACCACTTCACGCTGATGTGCAAGGACTTCGCCCAGCTCGGGCACTTCGTGAAG
TTGGACAACTCCGCGTTCCGCTCGATCAAGGCCGCGACCCCGGGGCCGTACACGTTCATCCTGCCGGCGACCCAGGAGGT
CCCCCGCCGGCTGATGCACCCCAAGAAGCGCACCGTGGGCGTCCGGATCCCGGCGCACGTCTTCGACCAGGCCCTCCTGG
GGACCCTCGGTGAGGCGCTGTTGACCAGCACCCTGATCCTGCCGGGGGAGACCGAGCCGCGCAGCCTCGGCTGGGAGATC
AAGGAGGAGCTCGACCACCAGGTCGACGTGGTGGTCGAGGCGGGCGAGACGCTGGCCGAGCCGACCACCGTCATCGACTG
GTCGGAGGGCTACCCCGAGGTGCTGCGGGTCGGCGCCGGCGACCCGGCCCGCTTCGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
ACGCTCGGGCGGTGCACAGCGCCGAGGAGTCGCTGATCTTCGCGCTGCCCCACGAGCTGCGGCGCGACCTCAAGGCCGCC
GGGCGGAGCTGAGCACCCGG

Downstream 100 bases:

>100_bases
GACAGCACCCGCTGGCGTACGGCGAGGATCGCCAGGCAGAGCAGGTAGCCGGTGACCAACGCGCCCGCGTGGTGCGACAA
CCCGGAGACGACCGCCTGGA

Product: translation factor SUA5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MARYVDVHPENPQSRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLDEKHHFTLMCKDFAQLGHFVK
LDNSAFRSIKAATPGPYTFILPATQEVPRRLMHPKKRTVGVRIPAHVFDQALLGTLGEALLTSTLILPGETEPRSLGWEI
KEELDHQVDVVVEAGETLAEPTTVIDWSEGYPEVLRVGAGDPARFEAA

Sequences:

>Translated_208_residues
MARYVDVHPENPQSRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLDEKHHFTLMCKDFAQLGHFVK
LDNSAFRSIKAATPGPYTFILPATQEVPRRLMHPKKRTVGVRIPAHVFDQALLGTLGEALLTSTLILPGETEPRSLGWEI
KEELDHQVDVVVEAGETLAEPTTVIDWSEGYPEVLRVGAGDPARFEAA
>Mature_207_residues
ARYVDVHPENPQSRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLDEKHHFTLMCKDFAQLGHFVKL
DNSAFRSIKAATPGPYTFILPATQEVPRRLMHPKKRTVGVRIPAHVFDQALLGTLGEALLTSTLILPGETEPRSLGWEIK
EELDHQVDVVVEAGETLAEPTTVIDWSEGYPEVLRVGAGDPARFEAA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=46.8292682926829, Blast_Score=208, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23276; Mature: 23145

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARYVDVHPENPQSRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLD
CCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCC
EKHHFTLMCKDFAQLGHFVKLDNSAFRSIKAATPGPYTFILPATQEVPRRLMHPKKRTVG
CCCCEEEEEHHHHHCCCEEEECCHHHHHEECCCCCCEEEEECCCHHHHHHHCCCCCCEEE
VRIPAHVFDQALLGTLGEALLTSTLILPGETEPRSLGWEIKEELDHQVDVVVEAGETLAE
EEECHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHCC
PTTVIDWSEGYPEVLRVGAGDPARFEAA
CCEEEECCCCCHHHEEECCCCCCCCCCC
>Mature Secondary Structure 
ARYVDVHPENPQSRLLDQIADALREDQLIAYPTDSGYALGCRLGNREGRDRILRIRRLD
CCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHCC
EKHHFTLMCKDFAQLGHFVKLDNSAFRSIKAATPGPYTFILPATQEVPRRLMHPKKRTVG
CCCCEEEEEHHHHHCCCEEEECCHHHHHEECCCCCCEEEEECCCHHHHHHHCCCCCCEEE
VRIPAHVFDQALLGTLGEALLTSTLILPGETEPRSLGWEIKEELDHQVDVVVEAGETLAE
EEECHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHCC
PTTVIDWSEGYPEVLRVGAGDPARFEAA
CCEEEECCCCCHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]