Definition | Nocardioides sp. JS614 chromosome, complete genome. |
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Accession | NC_008699 |
Length | 4,985,871 |
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The map label for this gene is yvyE [H]
Identifier: 119715205
GI number: 119715205
Start: 1009890
End: 1010549
Strand: Direct
Name: yvyE [H]
Synonym: Noca_0960
Alternate gene names: 119715205
Gene position: 1009890-1010549 (Clockwise)
Preceding gene: 119715204
Following gene: 119715206
Centisome position: 20.26
GC content: 76.67
Gene sequence:
>660_bases GTGGTGACCGGTTACCTGACGATCGGGCGCGACGCCGAGGCCGAGATCGAGGTCAAGCGCTCCCGGTTCCGGTGCACGCT CGAGCGGGTCGAGGACGAGGCCGCCGCCCGGGCCGTCGTCGAGCGGCTGCGCCGTGAGCACTGGGACGCCCGGCACCACT GCTCCGCCTTCCGGATCCGGCAGAGCGGCCTCGGCCCGGGCGGGGAGGTCGAGCGCTCGTCCGACGACGGCGAGCCCGCC GGCACCGCCGGCGCCCCGATGCTCGAGGTGCTCCGCGGCCACGCCGAGGGCGGGGTCAGCGACGTGGTCGCGGTGGTCAC CCGCTGGTTCGGCGGCACCCTGCTCGGCGCCGGCGGGCTGGTCCGGGCGTACGGCGACGCCGTGCGGGCCGGCCTGGCCG AGGCGGGGACCCTGCGGCGCAGCCTGGTACGCGAGCACCTCCTCGACCTCGGCCACGCCGACGCCGGCCGGGTCGAGAGC GAGCTGCGTTCGCGGGGCGTCGTCGTGCTGGACTCGACGTACGGCGTCCACGTCACGCTGCGTCTCGGCGTGCCGCCGGA CGAGGAGGAGCGGCTGGCCGCCCTCGTCGCCGAGCTCACCGCCGGCGCCGCGGAAACACGTGCCGCCGGCGAGCGCTGGG TCGATAGCCTCACCACATGA
Upstream 100 bases:
>100_bases CCCGGACCGCCGTCGCCCGGGGAGCCCGGTTCGTCCGGGCCTTCTTCGTGGTCGTGGTGGCCGCGTTCGTGGTGCGGATC GGTGGCGAGGTGGTGGGCCT
Downstream 100 bases:
>100_bases GCATCCCGGTGGACCTCGCCGACCTCGCGGCGACGCTCGCGGACTTCGACCGCGGCTACCTGCTGACCACGACCGACGGG CGGGTCAAGGCGGTGTCGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MVTGYLTIGRDAEAEIEVKRSRFRCTLERVEDEAAARAVVERLRREHWDARHHCSAFRIRQSGLGPGGEVERSSDDGEPA GTAGAPMLEVLRGHAEGGVSDVVAVVTRWFGGTLLGAGGLVRAYGDAVRAGLAEAGTLRRSLVREHLLDLGHADAGRVES ELRSRGVVVLDSTYGVHVTLRLGVPPDEEERLAALVAELTAGAAETRAAGERWVDSLTT
Sequences:
>Translated_219_residues MVTGYLTIGRDAEAEIEVKRSRFRCTLERVEDEAAARAVVERLRREHWDARHHCSAFRIRQSGLGPGGEVERSSDDGEPA GTAGAPMLEVLRGHAEGGVSDVVAVVTRWFGGTLLGAGGLVRAYGDAVRAGLAEAGTLRRSLVREHLLDLGHADAGRVES ELRSRGVVVLDSTYGVHVTLRLGVPPDEEERLAALVAELTAGAAETRAAGERWVDSLTT >Mature_219_residues MVTGYLTIGRDAEAEIEVKRSRFRCTLERVEDEAAARAVVERLRREHWDARHHCSAFRIRQSGLGPGGEVERSSDDGEPA GTAGAPMLEVLRGHAEGGVSDVVAVVTRWFGGTLLGAGGLVRAYGDAVRAGLAEAGTLRRSLVREHLLDLGHADAGRVES ELRSRGVVVLDSTYGVHVTLRLGVPPDEEERLAALVAELTAGAAETRAAGERWVDSLTT
Specific function: Unknown
COG id: COG1739
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IMPACT family [H]
Homologues:
Organism=Escherichia coli, GI87082338, Length=195, Percent_Identity=38.4615384615385, Blast_Score=102, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR020568 - InterPro: IPR000640 - InterPro: IPR015796 - InterPro: IPR015269 - InterPro: IPR020569 - InterPro: IPR001498 [H]
Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]
EC number: NA
Molecular weight: Translated: 23442; Mature: 23442
Theoretical pI: Translated: 5.64; Mature: 5.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTGYLTIGRDAEAEIEVKRSRFRCTLERVEDEAAARAVVERLRREHWDARHHCSAFRIR CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH QSGLGPGGEVERSSDDGEPAGTAGAPMLEVLRGHAEGGVSDVVAVVTRWFGGTLLGAGGL HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCH VRAYGDAVRAGLAEAGTLRRSLVREHLLDLGHADAGRVESELRSRGVVVLDSTYGVHVTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEE RLGVPPDEEERLAALVAELTAGAAETRAAGERWVDSLTT EECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVTGYLTIGRDAEAEIEVKRSRFRCTLERVEDEAAARAVVERLRREHWDARHHCSAFRIR CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH QSGLGPGGEVERSSDDGEPAGTAGAPMLEVLRGHAEGGVSDVVAVVTRWFGGTLLGAGGL HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHCCCCH VRAYGDAVRAGLAEAGTLRRSLVREHLLDLGHADAGRVESELRSRGVVVLDSTYGVHVTL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEECCCCEEEEE RLGVPPDEEERLAALVAELTAGAAETRAAGERWVDSLTT EECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 3141378; 8313894 [H]