| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is rfaB [C]
Identifier: 119715149
GI number: 119715149
Start: 944622
End: 947294
Strand: Reverse
Name: rfaB [C]
Synonym: Noca_0904
Alternate gene names: 119715149
Gene position: 947294-944622 (Counterclockwise)
Preceding gene: 119715150
Following gene: 119715143
Centisome position: 19.0
GC content: 74.22
Gene sequence:
>2673_bases ATGAGGATCGCCTACGTCGTCTTCAACCTCGACGGGATGGGCGGCACCTCCCGCTCCGCCATCACCCAGGCGAACGCCCT GGCCGGCGACCACGACGTGCGGCTGGTGAGCATCACCCGCAGCGCGGACCGGCCGCACTACGCCATCGACCCGCGGATCA CCGTCGACTACCTCGCGGACGTGCGCGAGGAGGTGCTGGCCGAGGACGACGCGGCGCGCGCGTTGAGCGAGCGCGAGTCG GTGCTGGTGCCGCCGCGCTGGGACAGCCAGTTCTCCGCGCTCACCGACGTCGCGATGAGCGCGGCCCTGCCCGGCCTGGA CGCGGATGTGGTCGTCACGGTGACACCGGCGCTGCTGGCCGCGGTGACCCAGCTGGTGCCGGACCGCGCGGTCCTCGTCC ACCAGGAGCACCGCTCCTCCTCCGACCGCACCTCCGGCCTGGAGCCGCTGCTCGCGTTCGCGCCCCGCGCGGACGTGGTC GCGATGCTCACCGAGTCCACGGCCGACTGGCTTCGCGACCAGCTCGGCGACCTCACGCCCGAGGTCGTCGTCATGCCCAA CCCGCTGCCGCTCGGCTTCACCCCGCGCTCCCGGCTCGACGGGCGCCTGATCGTCTCCGCCGGCCGGCTGGCCGTCGAGA AGCAGTTCACCAAGCTGGCGCTGGCCTTCGGGGAGATCGCCGACCAGCTGCCCGGCTGGCGGCTGCGGATCTTCGGCGAC GGCGCGCAGCGCAACGAGCTGCGCCGCCAGGCCCGCAAGCTCGGGCTCTACGACCGGCTGGAGCTGCCCGGCAGCACCAC GGACATGGCCGGTGAGTGGGCCAAGGCGAGCATCGCCGCCCTCACCTCGAGGGCCGAGGGCTTCCCGCTGGTGCTCCAGG AGGCGATGGCCGCCGGCGTCCCGGTCGCCAGCTTCGACTGCCCGTCCGGGCCCCGCGAGATCGTCGAGCACGACGTCAAC GGCCTGCTCGTCGCGCCCGACTCGGTCGCCGGCATGGCGAGCGCGCTGCTGCGCCTGGCGACCGACGACGAGCTGCGCGC GCGGCTCGGCGCCGGCGCCCTGCACTCCTCACGGCAGTACGACGCCCGTGCGCTGGCCGAGCAGTGGGTCGGGATCTTCG CCGACGCCCGGGCCCGGCGCGGCACGCTCGGTCGGGTGGCGGCGCGGGTCGGGGCGCCCCGGCACCGGTCGGTCGGTCCG GGGCCGACGGCCGACATCACCGGCATCACCCCGGCGCAGGCGCGCCACGCGGCGCTCGCCGCGGCGGTCGCCGCCGCGCG CTCGGCCACCGAGGAGTGGCTGGTGATCCCCGAGCACGAGTCGGCGGCGCCGGCGGTCGTGGTGCCGATGACCGCCCGCG ACGCGGTCCTCGCCGCGCTCGCCGAGGCCGAGCCGCCGGCGTACCTCTGCCTGCGCGAGCCCGCGGCCCAGGGCTGGCCC GAACGGCGCGGACCGGTGGGCGCGATGGCCACCGAGCTGCGCCGCGGCCGCACCGGGTCGGTGTTCCTCGAGCCGTGGCC CGAGGACGGCGAGCACGCCAGCGTGCTGGGCCAGGGGTGCGGGGTCGGGCTGGAGTTCTGGGAGACCAGCGTCGAGGACG AGCTGGTCGCGGCGCGGCCGAACCGCTACACCCGCCGGATCCCCCGCGGCACCCCCACGGTGGACACCGAGATCGGCGGC GTCGCCGTACGCACGCTGCCGCTGATGACCGAGCGCACCGTCAACGAGTGCGGCTTCCCGATCGACGTCGTCTACACGTG GGTCGACGGCAACGACCCGGTGTGGAACGCCGCGCGCGAGGACCGGCTGGCGCGGCTCAGCGGCACCGCCCTGACCCGCG AGTCCAGCGGCCGCGCGCGGTTCGTCTCGCGCGACGAGCTGCGCTACTCGATGCGCAGCGTGCACCTGTTCGCACCGTGG GTGCGCCGCATCCACCTCGTCACCGCCGGCCAGGTGCCGGACTGGCTGGACACCTCGCACCCGTCGATCCGGGTCGTCGA CCACGCCGAGATCCTCCCGGCCGGGGCGCTGCCGACGTTCAACTCGCACGCGATCGAGACCGGGCTGCACCACGTGCCCG ACCTGACCGAGCACTTCGTCTACCTCAACGACGACGTCTTCCTCGGCCGGCCGGTGCGGCCCGAGATCTTCTTCAGCCCG GCCGGGCTGTTCGCGGCCTTCATGTCGCCCACGCAGGTCGGGCTGGAGGACGTGCCCGGCGCCGCGCCGTTCCTGAAGGC GGCCTGGAACAACCGGCACCTGCTGCAGGAGGCGTTCGGCGTCGTCACCACCAACAACCTCGCGCACACGCCGCACCCGC ACCGCCGCTCGGTGCTCGACGAGGTCGAGCAGCGGTTCGCCGACGCGGTCGCGGGGACCGCGGCGGCGCCGTTCCGCTCC GACACCGACGTCTCGATGCTCAGCTCGCTGGCGCAGCACTACGGCCTGGCGACGGGCACGGCCTACCTCGGCGAGGCGGC CTTCGAGTTCGTCAACCTCAGCAACAGCGACCTGCTCCGCCAGCTCAACCAGCTGAGGGCGCGCCAGCAGGACTTCTTCT GCCTCGGCGACCACCACGACTACGCGATGGTGGCCGCCCGCCTGGACCAGGAGCTCGCGGCGTTCTTCTCGTCGTACTTC CCGGTCGCGGCGCCGTGGGAGGTCAAGCCTTGA
Upstream 100 bases:
>100_bases GAGCCCGACCTGGCCCGGCTGCGGCTGCGCTGGTCCCCCGAGGCACAACTGGTCGCCCGGGTCGTCGACCGCAACGAGGG CGAGGAGTAGTGGACGCCAG
Downstream 100 bases:
>100_bases GCCGCTCCTCGAGCCGCGCGATCCGCTTGTCCCGGTTCGCCAGCTTGCGGTTGAGGTTGCGTCGGACCCGGCCGACCTGG GCGGTGGTCTCGTCGAGGGC
Product: group 1 glycosyl transferase
Products: NA
Alternate protein names: Stealth protein SCO2592 [H]
Number of amino acids: Translated: 890; Mature: 890
Protein sequence:
>890_residues MRIAYVVFNLDGMGGTSRSAITQANALAGDHDVRLVSITRSADRPHYAIDPRITVDYLADVREEVLAEDDAARALSERES VLVPPRWDSQFSALTDVAMSAALPGLDADVVVTVTPALLAAVTQLVPDRAVLVHQEHRSSSDRTSGLEPLLAFAPRADVV AMLTESTADWLRDQLGDLTPEVVVMPNPLPLGFTPRSRLDGRLIVSAGRLAVEKQFTKLALAFGEIADQLPGWRLRIFGD GAQRNELRRQARKLGLYDRLELPGSTTDMAGEWAKASIAALTSRAEGFPLVLQEAMAAGVPVASFDCPSGPREIVEHDVN GLLVAPDSVAGMASALLRLATDDELRARLGAGALHSSRQYDARALAEQWVGIFADARARRGTLGRVAARVGAPRHRSVGP GPTADITGITPAQARHAALAAAVAAARSATEEWLVIPEHESAAPAVVVPMTARDAVLAALAEAEPPAYLCLREPAAQGWP ERRGPVGAMATELRRGRTGSVFLEPWPEDGEHASVLGQGCGVGLEFWETSVEDELVAARPNRYTRRIPRGTPTVDTEIGG VAVRTLPLMTERTVNECGFPIDVVYTWVDGNDPVWNAAREDRLARLSGTALTRESSGRARFVSRDELRYSMRSVHLFAPW VRRIHLVTAGQVPDWLDTSHPSIRVVDHAEILPAGALPTFNSHAIETGLHHVPDLTEHFVYLNDDVFLGRPVRPEIFFSP AGLFAAFMSPTQVGLEDVPGAAPFLKAAWNNRHLLQEAFGVVTTNNLAHTPHPHRRSVLDEVEQRFADAVAGTAAAPFRS DTDVSMLSSLAQHYGLATGTAYLGEAAFEFVNLSNSDLLRQLNQLRARQQDFFCLGDHHDYAMVAARLDQELAAFFSSYF PVAAPWEVKP
Sequences:
>Translated_890_residues MRIAYVVFNLDGMGGTSRSAITQANALAGDHDVRLVSITRSADRPHYAIDPRITVDYLADVREEVLAEDDAARALSERES VLVPPRWDSQFSALTDVAMSAALPGLDADVVVTVTPALLAAVTQLVPDRAVLVHQEHRSSSDRTSGLEPLLAFAPRADVV AMLTESTADWLRDQLGDLTPEVVVMPNPLPLGFTPRSRLDGRLIVSAGRLAVEKQFTKLALAFGEIADQLPGWRLRIFGD GAQRNELRRQARKLGLYDRLELPGSTTDMAGEWAKASIAALTSRAEGFPLVLQEAMAAGVPVASFDCPSGPREIVEHDVN GLLVAPDSVAGMASALLRLATDDELRARLGAGALHSSRQYDARALAEQWVGIFADARARRGTLGRVAARVGAPRHRSVGP GPTADITGITPAQARHAALAAAVAAARSATEEWLVIPEHESAAPAVVVPMTARDAVLAALAEAEPPAYLCLREPAAQGWP ERRGPVGAMATELRRGRTGSVFLEPWPEDGEHASVLGQGCGVGLEFWETSVEDELVAARPNRYTRRIPRGTPTVDTEIGG VAVRTLPLMTERTVNECGFPIDVVYTWVDGNDPVWNAAREDRLARLSGTALTRESSGRARFVSRDELRYSMRSVHLFAPW VRRIHLVTAGQVPDWLDTSHPSIRVVDHAEILPAGALPTFNSHAIETGLHHVPDLTEHFVYLNDDVFLGRPVRPEIFFSP AGLFAAFMSPTQVGLEDVPGAAPFLKAAWNNRHLLQEAFGVVTTNNLAHTPHPHRRSVLDEVEQRFADAVAGTAAAPFRS DTDVSMLSSLAQHYGLATGTAYLGEAAFEFVNLSNSDLLRQLNQLRARQQDFFCLGDHHDYAMVAARLDQELAAFFSSYF PVAAPWEVKP >Mature_890_residues MRIAYVVFNLDGMGGTSRSAITQANALAGDHDVRLVSITRSADRPHYAIDPRITVDYLADVREEVLAEDDAARALSERES VLVPPRWDSQFSALTDVAMSAALPGLDADVVVTVTPALLAAVTQLVPDRAVLVHQEHRSSSDRTSGLEPLLAFAPRADVV AMLTESTADWLRDQLGDLTPEVVVMPNPLPLGFTPRSRLDGRLIVSAGRLAVEKQFTKLALAFGEIADQLPGWRLRIFGD GAQRNELRRQARKLGLYDRLELPGSTTDMAGEWAKASIAALTSRAEGFPLVLQEAMAAGVPVASFDCPSGPREIVEHDVN GLLVAPDSVAGMASALLRLATDDELRARLGAGALHSSRQYDARALAEQWVGIFADARARRGTLGRVAARVGAPRHRSVGP GPTADITGITPAQARHAALAAAVAAARSATEEWLVIPEHESAAPAVVVPMTARDAVLAALAEAEPPAYLCLREPAAQGWP ERRGPVGAMATELRRGRTGSVFLEPWPEDGEHASVLGQGCGVGLEFWETSVEDELVAARPNRYTRRIPRGTPTVDTEIGG VAVRTLPLMTERTVNECGFPIDVVYTWVDGNDPVWNAAREDRLARLSGTALTRESSGRARFVSRDELRYSMRSVHLFAPW VRRIHLVTAGQVPDWLDTSHPSIRVVDHAEILPAGALPTFNSHAIETGLHHVPDLTEHFVYLNDDVFLGRPVRPEIFFSP AGLFAAFMSPTQVGLEDVPGAAPFLKAAWNNRHLLQEAFGVVTTNNLAHTPHPHRRSVLDEVEQRFADAVAGTAAAPFRS DTDVSMLSSLAQHYGLATGTAYLGEAAFEFVNLSNSDLLRQLNQLRARQQDFFCLGDHHDYAMVAARLDQELAAFFSSYF PVAAPWEVKP
Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the stealth family [H]
Homologues:
Organism=Homo sapiens, GI38202211, Length=130, Percent_Identity=40, Blast_Score=108, Evalue=2e-23, Organism=Escherichia coli, GI226510984, Length=139, Percent_Identity=33.8129496402878, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI28573948, Length=154, Percent_Identity=41.5584415584416, Blast_Score=125, Evalue=2e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 96483; Mature: 96483
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIAYVVFNLDGMGGTSRSAITQANALAGDHDVRLVSITRSADRPHYAIDPRITVDYLAD CEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCEEHHHHHH VREEVLAEDDAARALSERESVLVPPRWDSQFSALTDVAMSAALPGLDADVVVTVTPALLA HHHHHHCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH AVTQLVPDRAVLVHQEHRSSSDRTSGLEPLLAFAPRADVVAMLTESTADWLRDQLGDLTP HHHHHCCCCEEEEEHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC EVVVMPNPLPLGFTPRSRLDGRLIVSAGRLAVEKQFTKLALAFGEIADQLPGWRLRIFGD CEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC GAQRNELRRQARKLGLYDRLELPGSTTDMAGEWAKASIAALTSRAEGFPLVLQEAMAAGV CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCC PVASFDCPSGPREIVEHDVNGLLVAPDSVAGMASALLRLATDDELRARLGAGALHSSRQY CEEECCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCH DARALAEQWVGIFADARARRGTLGRVAARVGAPRHRSVGPGPTADITGITPAQARHAALA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AAVAAARSATEEWLVIPEHESAAPAVVVPMTARDAVLAALAEAEPPAYLCLREPAAQGWP HHHHHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECHHHCCCC ERRGPVGAMATELRRGRTGSVFLEPWPEDGEHASVLGQGCGVGLEFWETSVEDELVAARP CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCHHHHHCCCCCHHHHCCC NRYTRRIPRGTPTVDTEIGGVAVRTLPLMTERTVNECGFPIDVVYTWVDGNDPVWNAARE CHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH DRLARLSGTALTRESSGRARFVSRDELRYSMRSVHLFAPWVRRIHLVTAGQVPDWLDTSH HHHHHHCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCC PSIRVVDHAEILPAGALPTFNSHAIETGLHHVPDLTEHFVYLNDDVFLGRPVRPEIFFSP CCEEEEECHHHCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEECCCEEECCCCCCCEEECC AGLFAAFMSPTQVGLEDVPGAAPFLKAAWNNRHLLQEAFGVVTTNNLAHTPHPHRRSVLD HHHHHHHHCCHHCCHHHCCCCCHHHHHHCCCCHHHHHHHCEEEECCCCCCCCHHHHHHHH EVEQRFADAVAGTAAAPFRSDTDVSMLSSLAQHYGLATGTAYLGEAAFEFVNLSNSDLLR HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH QLNQLRARQQDFFCLGDHHDYAMVAARLDQELAAFFSSYFPVAAPWEVKP HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MRIAYVVFNLDGMGGTSRSAITQANALAGDHDVRLVSITRSADRPHYAIDPRITVDYLAD CEEEEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEECCCEEHHHHHH VREEVLAEDDAARALSERESVLVPPRWDSQFSALTDVAMSAALPGLDADVVVTVTPALLA HHHHHHCCCHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHH AVTQLVPDRAVLVHQEHRSSSDRTSGLEPLLAFAPRADVVAMLTESTADWLRDQLGDLTP HHHHHCCCCEEEEEHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC EVVVMPNPLPLGFTPRSRLDGRLIVSAGRLAVEKQFTKLALAFGEIADQLPGWRLRIFGD CEEEECCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC GAQRNELRRQARKLGLYDRLELPGSTTDMAGEWAKASIAALTSRAEGFPLVLQEAMAAGV CCHHHHHHHHHHHCCCHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCC PVASFDCPSGPREIVEHDVNGLLVAPDSVAGMASALLRLATDDELRARLGAGALHSSRQY CEEECCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCHHHHHHHCCCHHCCCCCH DARALAEQWVGIFADARARRGTLGRVAARVGAPRHRSVGPGPTADITGITPAQARHAALA HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH AAVAAARSATEEWLVIPEHESAAPAVVVPMTARDAVLAALAEAEPPAYLCLREPAAQGWP HHHHHHHCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHCCCCEEEEEECHHHCCCC ERRGPVGAMATELRRGRTGSVFLEPWPEDGEHASVLGQGCGVGLEFWETSVEDELVAARP CCCCCCHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCHHHHHCCCCCHHHHCCC NRYTRRIPRGTPTVDTEIGGVAVRTLPLMTERTVNECGFPIDVVYTWVDGNDPVWNAARE CHHHHCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH DRLARLSGTALTRESSGRARFVSRDELRYSMRSVHLFAPWVRRIHLVTAGQVPDWLDTSH HHHHHHCCCEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCC PSIRVVDHAEILPAGALPTFNSHAIETGLHHVPDLTEHFVYLNDDVFLGRPVRPEIFFSP CCEEEEECHHHCCCCCCCCCCCHHHHHHHHHCCCCHHCEEEECCCEEECCCCCCCEEECC AGLFAAFMSPTQVGLEDVPGAAPFLKAAWNNRHLLQEAFGVVTTNNLAHTPHPHRRSVLD HHHHHHHHCCHHCCHHHCCCCCHHHHHHCCCCHHHHHHHCEEEECCCCCCCCHHHHHHHH EVEQRFADAVAGTAAAPFRSDTDVSMLSSLAQHYGLATGTAYLGEAAFEFVNLSNSDLLR HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHH QLNQLRARQQDFFCLGDHHDYAMVAARLDQELAAFFSSYFPVAAPWEVKP HHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Glycosyltransferases; Hexosyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953 [H]