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The map label for this gene is ycdM [C]

Identifier: 119715094

GI number: 119715094

Start: 887220

End: 888101

Strand: Reverse

Name: ycdM [C]

Synonym: Noca_0849

Alternate gene names: 119715094

Gene position: 888101-887220 (Counterclockwise)

Preceding gene: 119715095

Following gene: 119715093

Centisome position: 17.81

GC content: 67.35

Gene sequence:

>882_bases
ATGAAGTTTGGACTGCGGCTGCCGGGGGCTGGCCCGTACGCCGGGCCGGAGGCGATCACCGCCTTCGCCCAGAAGGCCGA
GCAACTCGGCTTCGACTCCATCTGGATGACCGACCACATCGCGCTGCCGGTCGACGTCGCGTCGAAGTACCCGTACACCC
AGGACGGCAAGTTCTTCTGGCCGCCGGAGACGCCGTACTTCGACACGATCCTGACCCTGACCTGGGCGTCGGCCGCCACC
GAGCGGATCAAGGTCGGCACCTCGGTGCTGATCGCCGGCTGGCACCACCCGGTCAACACCGCGAAGGCCCTGGCCACCCT
CGACGTCCTCAATGGCGGCCGGACCATCTGCGCCGTCGGCACCGGCTGGATGCGCGAGCAGTTCGAGATCCTCGGCTCGC
CGTTCGAGACACGGGGCTCCCGGACCACGGAGTACCTCAAGCTCCTGCGCCACCTCTGGACCGAGGACCTGATCGACTTC
CACGGAGAGCACTTCGAGTTCTCGGGCTTCAAGTTCTACCCGAAGCCGATCAGCCAGCCCTCGATCCCGCTGTGGTGCGG
CGGCAAGAGCACCGGCGTCCTGAAGCGGGTGGCCGCCGCTGCCGACGGCTGGCACCCCCTGTACATCGCGCCCGACGAGC
TCGAGCGCAAGCTCAAGGAGCTCGAGGGCTACCTGGCGGAGCACGACCGAACGCTCGACGACATCACCCTGTCGGCGCGT
CCGGTCAGCCAGGCGACCCTCGACAAGGACACGATCGACCACTATGCCGGTCTCGGGGTCGAGCTGCTCATCGCTGACAC
CTCCTTCGACCACGACAACCTGCAGAGCGTGCTGGACGAGGTCGAGCAGCTCGCCGACCAGCTCATGCCGTTCGCGGACT
GA

Upstream 100 bases:

>100_bases
GAGCGCTTCGAGGAAGACCTCGTGGCTCCCCCAGTCTCGCGGAAGAGCAAGTCTGTAAAGGCATCCGGCCGCCATGGCCA
CCAACAGGAAGGCAAGTGAC

Downstream 100 bases:

>100_bases
CCAGAGAGGGCGCACCATGCTGAACCGGCTGTTCCACATCGCGATCAACTCCACCGACCTCGATCGGTCGGTGGCCTTCT
ACCAGCGACTGGGCTTCCAG

Product: luciferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKFGLRLPGAGPYAGPEAITAFAQKAEQLGFDSIWMTDHIALPVDVASKYPYTQDGKFFWPPETPYFDTILTLTWASAAT
ERIKVGTSVLIAGWHHPVNTAKALATLDVLNGGRTICAVGTGWMREQFEILGSPFETRGSRTTEYLKLLRHLWTEDLIDF
HGEHFEFSGFKFYPKPISQPSIPLWCGGKSTGVLKRVAAAADGWHPLYIAPDELERKLKELEGYLAEHDRTLDDITLSAR
PVSQATLDKDTIDHYAGLGVELLIADTSFDHDNLQSVLDEVEQLADQLMPFAD

Sequences:

>Translated_293_residues
MKFGLRLPGAGPYAGPEAITAFAQKAEQLGFDSIWMTDHIALPVDVASKYPYTQDGKFFWPPETPYFDTILTLTWASAAT
ERIKVGTSVLIAGWHHPVNTAKALATLDVLNGGRTICAVGTGWMREQFEILGSPFETRGSRTTEYLKLLRHLWTEDLIDF
HGEHFEFSGFKFYPKPISQPSIPLWCGGKSTGVLKRVAAAADGWHPLYIAPDELERKLKELEGYLAEHDRTLDDITLSAR
PVSQATLDKDTIDHYAGLGVELLIADTSFDHDNLQSVLDEVEQLADQLMPFAD
>Mature_293_residues
MKFGLRLPGAGPYAGPEAITAFAQKAEQLGFDSIWMTDHIALPVDVASKYPYTQDGKFFWPPETPYFDTILTLTWASAAT
ERIKVGTSVLIAGWHHPVNTAKALATLDVLNGGRTICAVGTGWMREQFEILGSPFETRGSRTTEYLKLLRHLWTEDLIDF
HGEHFEFSGFKFYPKPISQPSIPLWCGGKSTGVLKRVAAAADGWHPLYIAPDELERKLKELEGYLAEHDRTLDDITLSAR
PVSQATLDKDTIDHYAGLGVELLIADTSFDHDNLQSVLDEVEQLADQLMPFAD

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 32595; Mature: 32595

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFGLRLPGAGPYAGPEAITAFAQKAEQLGFDSIWMTDHIALPVDVASKYPYTQDGKFFW
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCEECCHHHHCCCCCCCCCCEEC
PPETPYFDTILTLTWASAATERIKVGTSVLIAGWHHPVNTAKALATLDVLNGGRTICAVG
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
TGWMREQFEILGSPFETRGSRTTEYLKLLRHLWTEDLIDFHGEHFEFSGFKFYPKPISQP
CCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEEECCCCCCCC
SIPLWCGGKSTGVLKRVAAAADGWHPLYIAPDELERKLKELEGYLAEHDRTLDDITLSAR
CCEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHEEECCC
PVSQATLDKDTIDHYAGLGVELLIADTSFDHDNLQSVLDEVEQLADQLMPFAD
CCCHHHCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFGLRLPGAGPYAGPEAITAFAQKAEQLGFDSIWMTDHIALPVDVASKYPYTQDGKFFW
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCEECCHHHHCCCCCCCCCCEEC
PPETPYFDTILTLTWASAATERIKVGTSVLIAGWHHPVNTAKALATLDVLNGGRTICAVG
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC
TGWMREQFEILGSPFETRGSRTTEYLKLLRHLWTEDLIDFHGEHFEFSGFKFYPKPISQP
CCHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEEECCCCCCCC
SIPLWCGGKSTGVLKRVAAAADGWHPLYIAPDELERKLKELEGYLAEHDRTLDDITLSAR
CCEEEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCHHHEEECCC
PVSQATLDKDTIDHYAGLGVELLIADTSFDHDNLQSVLDEVEQLADQLMPFAD
CCCHHHCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]