| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119714970
Identifier: 119714970
GI number: 119714970
Start: 769096
End: 770184
Strand: Reverse
Name: 119714970
Synonym: Noca_0723
Alternate gene names: NA
Gene position: 770184-769096 (Counterclockwise)
Preceding gene: 119714977
Following gene: 119714969
Centisome position: 15.45
GC content: 70.8
Gene sequence:
>1089_bases ATGGCGGCCGGCGTCCCCGCGAACACCGGGGCCGCACATCCCGTGGTCGACGGCAACCGGATCATCGACGCCCGCAGCGG TCGCGACTTCGTGCCGCGTGGGGTCAACTGGAGCAGCTTCGAGTACGCCTGCGCCCAGGGCTGGGGCATGTCGGCGCTCG ACAACCTGGTCGCCCGGGACCCGGCCACGACGGAGGCGAAGGAGATCGCCGGCTGGGGTGCGAACACGGTCCGGCTCCCC CTCAACCAGGACTGTTGGCTCGGCACCCGCGGAGCACCGGTCAGCGACCAGTACGAGGAACGCTCGGTGGCCGGCTACCG CAGCGACGTGCACGCGTTCGTGACCGCGCTCAACCGGGCCGGCATCGTGGTCGTGCTGGACCTGCACAGCCGCAAGCGGA TCGGGCAGCCGGAGTTCGGCAACCTGGCGATGCCGGACTCCGAGTCGATCGCGTTCTGGACCTCGGTCGCCACCGAGTAC GCCGACAACCCGTCGGTGCTGTTCGACGCCTTCAACGAGCCCTACTCCCGGTACAGCTCCAGCGGTGCCCGGCTGTTGTT CGGGCTCACCTGGCGGTGCTGGCGGGACGGCGGTTGCCAGGCGCCGGTCGAGGATGACCAGACCGCGACCCTCGGACAGG TCACCTATCCCGTCCAGGGCATGGCCGCCGTGGTCAACGCCATCCGGGACGCCGGTGCCGAGCAGCCGATCCTGCTCGGC GGCCTGGACTACGCCAACGACATCAGCCACTGGCTGGAGTTCGCGCCGGACGACGACCAGCTGGTGGCGGCGTTCCACTC CTACGACTTCAAGGCGTGCGGCGACCCGGACTGCTGGAACGACGTCATCGCCCCGGTCGCCGAGACCGTGCCCGTGCTGA CCTCCGAGCTCGGGGCCCGCCATCCCGAGAACGGGTACGTCGGGCGCTACCTCGACTGGGCCGACGAGCACAACCTGGGT GTGCTGTTCTGGGTCTGGGCGGACCATCCCGGCGACCCGATGGCACTGGTCACCGACGAGCGCGGTCGGCCGACGGCGTA CGGCCGGGCTGCGCGCACCTGGCTGACCGGGCACCTGCCGGCACGGTGA
Upstream 100 bases:
>100_bases CATGCGGCTGCACGCGCGGCACCAGGCACGCTGGATCGTGCTCGCCGTGGTCGTGGCACTGGTCGCCGGCACCGGCCTCT ACCTCCAGCTGCGCACCCCG
Downstream 100 bases:
>100_bases CCGGCTCCCGGCGGCCCGGAGATCCACAGGCGGTCCACACGTCGTCAACGATCGATCAACAGTCCGTCAACGGTGGACCA GACCGCTCCTGGGGCCGGCG
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Endoglucanase CelA
Number of amino acids: Translated: 362; Mature: 361
Protein sequence:
>362_residues MAAGVPANTGAAHPVVDGNRIIDARSGRDFVPRGVNWSSFEYACAQGWGMSALDNLVARDPATTEAKEIAGWGANTVRLP LNQDCWLGTRGAPVSDQYEERSVAGYRSDVHAFVTALNRAGIVVVLDLHSRKRIGQPEFGNLAMPDSESIAFWTSVATEY ADNPSVLFDAFNEPYSRYSSSGARLLFGLTWRCWRDGGCQAPVEDDQTATLGQVTYPVQGMAAVVNAIRDAGAEQPILLG GLDYANDISHWLEFAPDDDQLVAAFHSYDFKACGDPDCWNDVIAPVAETVPVLTSELGARHPENGYVGRYLDWADEHNLG VLFWVWADHPGDPMALVTDERGRPTAYGRAARTWLTGHLPAR
Sequences:
>Translated_362_residues MAAGVPANTGAAHPVVDGNRIIDARSGRDFVPRGVNWSSFEYACAQGWGMSALDNLVARDPATTEAKEIAGWGANTVRLP LNQDCWLGTRGAPVSDQYEERSVAGYRSDVHAFVTALNRAGIVVVLDLHSRKRIGQPEFGNLAMPDSESIAFWTSVATEY ADNPSVLFDAFNEPYSRYSSSGARLLFGLTWRCWRDGGCQAPVEDDQTATLGQVTYPVQGMAAVVNAIRDAGAEQPILLG GLDYANDISHWLEFAPDDDQLVAAFHSYDFKACGDPDCWNDVIAPVAETVPVLTSELGARHPENGYVGRYLDWADEHNLG VLFWVWADHPGDPMALVTDERGRPTAYGRAARTWLTGHLPAR >Mature_361_residues AAGVPANTGAAHPVVDGNRIIDARSGRDFVPRGVNWSSFEYACAQGWGMSALDNLVARDPATTEAKEIAGWGANTVRLPL NQDCWLGTRGAPVSDQYEERSVAGYRSDVHAFVTALNRAGIVVVLDLHSRKRIGQPEFGNLAMPDSESIAFWTSVATEYA DNPSVLFDAFNEPYSRYSSSGARLLFGLTWRCWRDGGCQAPVEDDQTATLGQVTYPVQGMAAVVNAIRDAGAEQPILLGG LDYANDISHWLEFAPDDDQLVAAFHSYDFKACGDPDCWNDVIAPVAETVPVLTSELGARHPENGYVGRYLDWADEHNLGV LFWVWADHPGDPMALVTDERGRPTAYGRAARTWLTGHLPAR
Specific function: Unknown
COG id: COG2730
COG function: function code G; Endoglucanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39441; Mature: 39310
Theoretical pI: Translated: 4.49; Mature: 4.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAGVPANTGAAHPVVDGNRIIDARSGRDFVPRGVNWSSFEYACAQGWGMSALDNLVARD CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCC PATTEAKEIAGWGANTVRLPLNQDCWLGTRGAPVSDQYEERSVAGYRSDVHAFVTALNRA CCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC GIVVVLDLHSRKRIGQPEFGNLAMPDSESIAFWTSVATEYADNPSVLFDAFNEPYSRYSS CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEHHHCCHHHHHCC SGARLLFGLTWRCWRDGGCQAPVEDDQTATLGQVTYPVQGMAAVVNAIRDAGAEQPILLG CCCEEEEEEEEEEECCCCCCCCCCCCCCCEECEEECCHHHHHHHHHHHHHCCCCCCEEEE GLDYANDISHWLEFAPDDDQLVAAFHSYDFKACGDPDCWNDVIAPVAETVPVLTSELGAR CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC HPENGYVGRYLDWADEHNLGVLFWVWADHPGDPMALVTDERGRPTAYGRAARTWLTGHLP CCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHEEECCCC AR CC >Mature Secondary Structure AAGVPANTGAAHPVVDGNRIIDARSGRDFVPRGVNWSSFEYACAQGWGMSALDNLVARD CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHCC PATTEAKEIAGWGANTVRLPLNQDCWLGTRGAPVSDQYEERSVAGYRSDVHAFVTALNRA CCCCCHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC GIVVVLDLHSRKRIGQPEFGNLAMPDSESIAFWTSVATEYADNPSVLFDAFNEPYSRYSS CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHCCCCCEEEHHHCCHHHHHCC SGARLLFGLTWRCWRDGGCQAPVEDDQTATLGQVTYPVQGMAAVVNAIRDAGAEQPILLG CCCEEEEEEEEEEECCCCCCCCCCCCCCCEECEEECCHHHHHHHHHHHHHCCCCCCEEEE GLDYANDISHWLEFAPDDDQLVAAFHSYDFKACGDPDCWNDVIAPVAETVPVLTSELGAR CCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC HPENGYVGRYLDWADEHNLGVLFWVWADHPGDPMALVTDERGRPTAYGRAARTWLTGHLP CCCCCCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHEEECCCC AR CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA