| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119714885
Identifier: 119714885
GI number: 119714885
Start: 674153
End: 675613
Strand: Reverse
Name: 119714885
Synonym: Noca_0637
Alternate gene names: NA
Gene position: 675613-674153 (Counterclockwise)
Preceding gene: 119714886
Following gene: 119714882
Centisome position: 13.55
GC content: 63.79
Gene sequence:
>1461_bases ATGCAACGAACCATCACATGGGCGCACACCTGTGAGGTGGCCGACCCCTGGAACTGGCTGGGAAACGGTGATCTCCTGAT GACCGACGGCTACAGCTTCCCGTCGGACGCCGCCGCCCAGGTCAACTTCATCAGGCAGCTCGCGGACGCAAGCATTGTTG GCCTGGCTCTCGGCGAAGGGTTCGCTGCCCCCCCACTAACCGCCGAGGCCATCGCCGCAGCGGACTCGATCGACTTTCCC ATCCTGATGACGGCGCGCAACGTCCCGTTCGTCACGATCGCCCGCTTGGTGGCGGAGGCCAGCAGCGGACGTGCACATTC GAGGGCAGCCAAGGTCCTGCGCCTCTATGACGTCCTGCGTCGAACCCATCAGGGAGCCATGGTGGACGACCTACTGGAGC GCCTCGGCGGCGAGCTTCACGCCAGCCTGCATGTGATCGAACTTCGGACGGGCAGCAGCCTCCTACCTGCTCCGACCGGG CTACCGCCAGAGGTGCGCGAAGCGGCCCTCAAGAGGGCACAGTCGGAGAAGGGACGCCTCCCGGCCTTCAACCGCCTGGC TGACGACCACGTTTCAGCGCTTCTCGTACCAGTAGGAACGCGGGGAAGTGCCGGCCTCGTGGTGCGCGCCTGGCCCGAAG GTGAGGTCCCCGACCTACTCCTCACGCAGCACGCAGCAATGATCGTGGAACTTGAGGTCGAGCGACGTGCAGCTCAGGCA TCGCGAATCAGAGCGCGAGGAGCGGATCTCACTCGCCGGATGCTCGACGGCACGATCACACCCGAGGCAGCGGCGAGTCA GATCCGACTTCATCGGCTCGGCGACGGTCCTTGGCGGGTAACCCTGTGGCAGGAGGAAAACGATGATCACTCGACACACC CTCGAGCGATCGGGCTTGCGGAAGGGCTGGAGTACGTCCAGTGGCCCCATCTGCACTTGCCGGTGGGAGAACTCCACCTG ATCGTTGTCGACGACGATCGGTTCCTAGCGGGGCTTGAGCTTGACTTCGTTGACGCCACGGTGGGGGCTAGTCAACCCGT CGCGTCGCTCACCCGCCTCTCGGATGCGTTCCGGGAGGCTCAATGGGCACTTGAGAGCGCTCGCGCAGCCTCTGTGCAGA GCGCGATTTATGGATCCCACGGTTCCTACTTCATGCCGAATACCGTGGCAGAAGGCGAAGCGGCGGTTCAGCGCCTCCTC GGCCCGATCATCAAATACGACGAGGAACACGGAGCCAATCTGCTCGGCTCGCTTCAGGTCTACTTCGAGGTCAATCGATC ATGGCAGGAGGGGGCACGCCGACTTGGCATCCACAAGCAGACTCTGGTCTATCGACTCAAGAAGATCGAAGAGATGACCG GCGCCGACCTCCGAGACTTTGGCGTCCAGGCCGAGTTGTACCTTGCGCTGCGCACCCGCCAACTTCTCAGCACTACCGGG CGGGGAGCACTCGGCGGATAG
Upstream 100 bases:
>100_bases TCGTGTACGCGCGTGTGATTATGAAGGCGTGAGCCTGACGGTCGAATCGCTCGTCACGGACCCGCTCATCCGAACTCGGA TCGTTGCGGGGCGAGATGGG
Downstream 100 bases:
>100_bases AGCTGTAGCGCTCTCGAACACCACGCTGAGCGAGCAACGACGCGGCCAGCTCCGACCAGTTCAACTTTTCCGCAATTGCC GAGTTTCCACCGCCAACGTC
Product: purine catabolism PurC domain-containing protein
Products: NA
Alternate protein names: PucR Family Transcriptional Regulator; Regulatory Protein; Transcriptional Regulator PucR Family; Transcriptional Regulator; Transcriptional Regulator CdaR; Purine Catabolism PurC Domain-Containing Protein; Purine Catabolism Regulatory Protein; LigA Protein; Helix-Turn-Helix Fis-Type; Transcription Regulator; Purine Catabolism PurC-Like Protein; Regulator Of Polyketide Synthase Expression
Number of amino acids: Translated: 486; Mature: 486
Protein sequence:
>486_residues MQRTITWAHTCEVADPWNWLGNGDLLMTDGYSFPSDAAAQVNFIRQLADASIVGLALGEGFAAPPLTAEAIAAADSIDFP ILMTARNVPFVTIARLVAEASSGRAHSRAAKVLRLYDVLRRTHQGAMVDDLLERLGGELHASLHVIELRTGSSLLPAPTG LPPEVREAALKRAQSEKGRLPAFNRLADDHVSALLVPVGTRGSAGLVVRAWPEGEVPDLLLTQHAAMIVELEVERRAAQA SRIRARGADLTRRMLDGTITPEAAASQIRLHRLGDGPWRVTLWQEENDDHSTHPRAIGLAEGLEYVQWPHLHLPVGELHL IVVDDDRFLAGLELDFVDATVGASQPVASLTRLSDAFREAQWALESARAASVQSAIYGSHGSYFMPNTVAEGEAAVQRLL GPIIKYDEEHGANLLGSLQVYFEVNRSWQEGARRLGIHKQTLVYRLKKIEEMTGADLRDFGVQAELYLALRTRQLLSTTG RGALGG
Sequences:
>Translated_486_residues MQRTITWAHTCEVADPWNWLGNGDLLMTDGYSFPSDAAAQVNFIRQLADASIVGLALGEGFAAPPLTAEAIAAADSIDFP ILMTARNVPFVTIARLVAEASSGRAHSRAAKVLRLYDVLRRTHQGAMVDDLLERLGGELHASLHVIELRTGSSLLPAPTG LPPEVREAALKRAQSEKGRLPAFNRLADDHVSALLVPVGTRGSAGLVVRAWPEGEVPDLLLTQHAAMIVELEVERRAAQA SRIRARGADLTRRMLDGTITPEAAASQIRLHRLGDGPWRVTLWQEENDDHSTHPRAIGLAEGLEYVQWPHLHLPVGELHL IVVDDDRFLAGLELDFVDATVGASQPVASLTRLSDAFREAQWALESARAASVQSAIYGSHGSYFMPNTVAEGEAAVQRLL GPIIKYDEEHGANLLGSLQVYFEVNRSWQEGARRLGIHKQTLVYRLKKIEEMTGADLRDFGVQAELYLALRTRQLLSTTG RGALGG >Mature_486_residues MQRTITWAHTCEVADPWNWLGNGDLLMTDGYSFPSDAAAQVNFIRQLADASIVGLALGEGFAAPPLTAEAIAAADSIDFP ILMTARNVPFVTIARLVAEASSGRAHSRAAKVLRLYDVLRRTHQGAMVDDLLERLGGELHASLHVIELRTGSSLLPAPTG LPPEVREAALKRAQSEKGRLPAFNRLADDHVSALLVPVGTRGSAGLVVRAWPEGEVPDLLLTQHAAMIVELEVERRAAQA SRIRARGADLTRRMLDGTITPEAAASQIRLHRLGDGPWRVTLWQEENDDHSTHPRAIGLAEGLEYVQWPHLHLPVGELHL IVVDDDRFLAGLELDFVDATVGASQPVASLTRLSDAFREAQWALESARAASVQSAIYGSHGSYFMPNTVAEGEAAVQRLL GPIIKYDEEHGANLLGSLQVYFEVNRSWQEGARRLGIHKQTLVYRLKKIEEMTGADLRDFGVQAELYLALRTRQLLSTTG RGALGG
Specific function: Unknown
COG id: COG2508
COG function: function code TQ; Regulator of polyketide synthase expression
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52974; Mature: 52974
Theoretical pI: Translated: 6.09; Mature: 6.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRTITWAHTCEVADPWNWLGNGDLLMTDGYSFPSDAAAQVNFIRQLADASIVGLALGEG CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC FAAPPLTAEAIAAADSIDFPILMTARNVPFVTIARLVAEASSGRAHSRAAKVLRLYDVLR CCCCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH RTHQGAMVDDLLERLGGELHASLHVIELRTGSSLLPAPTGLPPEVREAALKRAQSEKGRL HHCCCCHHHHHHHHHCCHHEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC PAFNRLADDHVSALLVPVGTRGSAGLVVRAWPEGEVPDLLLTQHAAMIVELEVERRAAQA CHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHCEEEEEEEHHHHHHHH SRIRARGADLTRRMLDGTITPEAAASQIRLHRLGDGPWRVTLWQEENDDHSTHPRAIGLA HHHHHCCHHHHHHHHCCCCCCHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCEEEHH EGLEYVQWPHLHLPVGELHLIVVDDDRFLAGLELDFVDATVGASQPVASLTRLSDAFREA HHHHHHCCCCEECCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH QWALESARAASVQSAIYGSHGSYFMPNTVAEGEAAVQRLLGPIIKYDEEHGANLLGSLQV HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEE YFEVNRSWQEGARRLGIHKQTLVYRLKKIEEMTGADLRDFGVQAELYLALRTRQLLSTTG EEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEHHHHHHHHHHHHCC RGALGG CCCCCC >Mature Secondary Structure MQRTITWAHTCEVADPWNWLGNGDLLMTDGYSFPSDAAAQVNFIRQLADASIVGLALGEG CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCC FAAPPLTAEAIAAADSIDFPILMTARNVPFVTIARLVAEASSGRAHSRAAKVLRLYDVLR CCCCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH RTHQGAMVDDLLERLGGELHASLHVIELRTGSSLLPAPTGLPPEVREAALKRAQSEKGRL HHCCCCHHHHHHHHHCCHHEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC PAFNRLADDHVSALLVPVGTRGSAGLVVRAWPEGEVPDLLLTQHAAMIVELEVERRAAQA CHHHHHHHHCCEEEEEECCCCCCCCEEEEECCCCCCCHHHHHHHCEEEEEEEHHHHHHHH SRIRARGADLTRRMLDGTITPEAAASQIRLHRLGDGPWRVTLWQEENDDHSTHPRAIGLA HHHHHCCHHHHHHHHCCCCCCHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCEEEHH EGLEYVQWPHLHLPVGELHLIVVDDDRFLAGLELDFVDATVGASQPVASLTRLSDAFREA HHHHHHCCCCEECCCCCEEEEEEECCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHH QWALESARAASVQSAIYGSHGSYFMPNTVAEGEAAVQRLLGPIIKYDEEHGANLLGSLQV HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHEEEEE YFEVNRSWQEGARRLGIHKQTLVYRLKKIEEMTGADLRDFGVQAELYLALRTRQLLSTTG EEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHCCCCEEHHHHHHHHHHHHCC RGALGG CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA