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The map label for this gene is rbsA [C]

Identifier: 119714867

GI number: 119714867

Start: 645763

End: 647367

Strand: Reverse

Name: rbsA [C]

Synonym: Noca_0611

Alternate gene names: 119714867

Gene position: 647367-645763 (Counterclockwise)

Preceding gene: 119714868

Following gene: 119714866

Centisome position: 12.98

GC content: 65.05

Gene sequence:

>1605_bases
ATGAACGAACACACCACCACGGAGCACACCCAGGCGGAGCAGGCGAGGAAGGTTGCGCTCGCCGTCCTGGACGTCAGCAA
GACCTACGGCGCCACTCGCGCTCTCGATCGGGTTTCGCTGAAGGTCACGACTGGTGCCATCCATGGTCTGATGGGTGGCA
ACGGGTCTGGGAAGTCCACCTTGATCAAGATGTTGGCGGGTGTCGTCACGCCTGACGAGGGCAAGCTGGCGCTGAATGGC
GACTGGATCGACGCGCGGTCCCACACGCCCTCGCGGGCGAAGGCATCCGGACTTCACTTCGTCCACCAGCAGAACTCGAC
CTTCCCGGACCTCTCGGTCGCTGAGAACTTGGCGCTCGGTCGCGGCTTCGAGTCGACGGCCGTCAAGTCAATCAACTGGA
GGGCACAGAAGGCACGGGCCAGGCAAGTGCTCGACCGGTTCGAGATCGACGTCGCCGCCGACGCCCATCTGGTCCGCCTA
TCCCCTGCAGCACAGATGATGGTGGCGATCGCCCGGGCGCTCCAGGATCAAGATGACACCGCCGAACGTGGCGTGCTGGT
TCTGGACGAGCCGACGGCCAGTCTGCCGAAGCATGAGGTCGACGTGCTCCTCACGGCCTTGCGGAAGTACGCCGCCGACG
GCCAGACGATCATCTATGTCTCACATCGGCTCGAAGAGGTCACCGCCATCACCAACGAGGTGACGGTACTCCGCAACGGC
AGCGTCGCGTCACGCCTCACCGGTGCAGCCATCAGCCACGACACACTCGTGGCCGGCATCACCGGCTCGGCGTCTGCGCA
GCCCGCGCTGCGCCCGCGGCGTGGCAACGACGTGGTGGCGAGCGGTGTTCCCCTCTCCCAGGTAGCGGGTTCCCGGGAGA
CGGCGCTTACGCTGCGTCGTCGAACTGCGACCGGTCTAAAGAAGGAGATGTTGCTGGTCCGGGCCGGCGAGATCGTGGGC
ATCGCAGGCCTACTCGGGTCGGGGCGCTCGCGCATGTTGAAGCAGATCTTCGGGGCCGCGCATAGGGACGACTTCGAGGT
CGCGGTCCGGTCGGGCACGGTGCCATCGTCCGACATGCGGACCTCAATGAAGAGGGGCTTGGCTCTTGTCCCCGAGAACC
GTTTGCGCGAAGCGGCACTGCCGGAGCTCAGCATTGCTGAGAATCTGTCGATCACGTCGCTCAGCGAACATGCGCGCGCG
GGTTGGATCCGCCCTTCGAGAGAGCGGAAGGCGGCCAAGCGACTGATCCAGGAGTTCGGAGTCCGTGCGCCGAGCACCAC
TGCGCCGTTGACATCCCTTTCAGGCGGCAATCAGCAGAAGGTCATCCTGGCGAGATGGCTGCAACGTCGTCCAGACGTTC
TGCTGTTGGACGAGCCGACGCAGGGCGTCGACATCGGGGCTCGCAACGAGATCCACGAACTGGTGCGCGCCGCAGCGTCG
GCCGGTACGGCCGTGCTGGTGGTCTCCTCGGACTTCGGGGAGCTGGCGGCACTGGCTCAACGCGCCGTGGTCATCAGCGG
CGGCGAGATCGTCGACAGCGTCGACGGGCCTCTGACTGAGGACATCCTTAACGACATCGTGTACGCACAGGAGAAGGCAT
TATGA

Upstream 100 bases:

>100_bases
GATCCACAGTTGCGTGTCTTTTCGCCGGGAGGGTCGGGACGGTACCGATAGCCGGACCAAGCAGCGGCCCGTGTGCAGAG
CAGCCACCCCAGGAGTACCA

Downstream 100 bases:

>100_bases
GTCACACGCAAGACACCACCGACGCGCCCGTCGCGTCACCGGACGCCGAGACGTTGCCGGCTCCTACAGGCGTCGCCGAA
GCGGAGCAGAAGCGCAAGGC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MNEHTTTEHTQAEQARKVALAVLDVSKTYGATRALDRVSLKVTTGAIHGLMGGNGSGKSTLIKMLAGVVTPDEGKLALNG
DWIDARSHTPSRAKASGLHFVHQQNSTFPDLSVAENLALGRGFESTAVKSINWRAQKARARQVLDRFEIDVAADAHLVRL
SPAAQMMVAIARALQDQDDTAERGVLVLDEPTASLPKHEVDVLLTALRKYAADGQTIIYVSHRLEEVTAITNEVTVLRNG
SVASRLTGAAISHDTLVAGITGSASAQPALRPRRGNDVVASGVPLSQVAGSRETALTLRRRTATGLKKEMLLVRAGEIVG
IAGLLGSGRSRMLKQIFGAAHRDDFEVAVRSGTVPSSDMRTSMKRGLALVPENRLREAALPELSIAENLSITSLSEHARA
GWIRPSRERKAAKRLIQEFGVRAPSTTAPLTSLSGGNQQKVILARWLQRRPDVLLLDEPTQGVDIGARNEIHELVRAAAS
AGTAVLVVSSDFGELAALAQRAVVISGGEIVDSVDGPLTEDILNDIVYAQEKAL

Sequences:

>Translated_534_residues
MNEHTTTEHTQAEQARKVALAVLDVSKTYGATRALDRVSLKVTTGAIHGLMGGNGSGKSTLIKMLAGVVTPDEGKLALNG
DWIDARSHTPSRAKASGLHFVHQQNSTFPDLSVAENLALGRGFESTAVKSINWRAQKARARQVLDRFEIDVAADAHLVRL
SPAAQMMVAIARALQDQDDTAERGVLVLDEPTASLPKHEVDVLLTALRKYAADGQTIIYVSHRLEEVTAITNEVTVLRNG
SVASRLTGAAISHDTLVAGITGSASAQPALRPRRGNDVVASGVPLSQVAGSRETALTLRRRTATGLKKEMLLVRAGEIVG
IAGLLGSGRSRMLKQIFGAAHRDDFEVAVRSGTVPSSDMRTSMKRGLALVPENRLREAALPELSIAENLSITSLSEHARA
GWIRPSRERKAAKRLIQEFGVRAPSTTAPLTSLSGGNQQKVILARWLQRRPDVLLLDEPTQGVDIGARNEIHELVRAAAS
AGTAVLVVSSDFGELAALAQRAVVISGGEIVDSVDGPLTEDILNDIVYAQEKAL
>Mature_534_residues
MNEHTTTEHTQAEQARKVALAVLDVSKTYGATRALDRVSLKVTTGAIHGLMGGNGSGKSTLIKMLAGVVTPDEGKLALNG
DWIDARSHTPSRAKASGLHFVHQQNSTFPDLSVAENLALGRGFESTAVKSINWRAQKARARQVLDRFEIDVAADAHLVRL
SPAAQMMVAIARALQDQDDTAERGVLVLDEPTASLPKHEVDVLLTALRKYAADGQTIIYVSHRLEEVTAITNEVTVLRNG
SVASRLTGAAISHDTLVAGITGSASAQPALRPRRGNDVVASGVPLSQVAGSRETALTLRRRTATGLKKEMLLVRAGEIVG
IAGLLGSGRSRMLKQIFGAAHRDDFEVAVRSGTVPSSDMRTSMKRGLALVPENRLREAALPELSIAENLSITSLSEHARA
GWIRPSRERKAAKRLIQEFGVRAPSTTAPLTSLSGGNQQKVILARWLQRRPDVLLLDEPTQGVDIGARNEIHELVRAAAS
AGTAVLVVSSDFGELAALAQRAVVISGGEIVDSVDGPLTEDILNDIVYAQEKAL

Specific function: Part of an ABC transporter complex involved in carbohydrate import. Could be involved in ribose, galactose and/or methyl galactoside import. Responsible for energy coupling to the transport system [H]

COG id: COG1129

COG function: function code G; ABC-type sugar transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=245, Percent_Identity=26.9387755102041, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=25.1162790697674, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI42741659, Length=212, Percent_Identity=31.1320754716981, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI171184400, Length=236, Percent_Identity=29.2372881355932, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1790190, Length=489, Percent_Identity=31.9018404907975, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI48995001, Length=484, Percent_Identity=35.5371900826446, Blast_Score=265, Evalue=8e-72,
Organism=Escherichia coli, GI1788897, Length=503, Percent_Identity=33.5984095427435, Blast_Score=264, Evalue=8e-72,
Organism=Escherichia coli, GI1788210, Length=494, Percent_Identity=33.4008097165992, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI1788472, Length=492, Percent_Identity=31.7073170731707, Blast_Score=259, Evalue=3e-70,
Organism=Escherichia coli, GI1790525, Length=495, Percent_Identity=31.9191919191919, Blast_Score=258, Evalue=6e-70,
Organism=Escherichia coli, GI1789991, Length=495, Percent_Identity=31.7171717171717, Blast_Score=249, Evalue=5e-67,
Organism=Escherichia coli, GI1787792, Length=511, Percent_Identity=31.3111545988258, Blast_Score=241, Evalue=7e-65,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=29.5454545454545, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI1788761, Length=226, Percent_Identity=28.3185840707965, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787089, Length=225, Percent_Identity=29.7777777777778, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87081709, Length=221, Percent_Identity=27.6018099547511, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI87081791, Length=244, Percent_Identity=28.2786885245902, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1790467, Length=249, Percent_Identity=30.1204819277108, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787370, Length=247, Percent_Identity=26.7206477732794, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1790544, Length=242, Percent_Identity=31.404958677686, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786872, Length=221, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788225, Length=241, Percent_Identity=26.9709543568465, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786253, Length=235, Percent_Identity=30.6382978723404, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=27.5555555555556, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789032, Length=282, Percent_Identity=25.886524822695, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI48994943, Length=504, Percent_Identity=23.8095238095238, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1790739, Length=223, Percent_Identity=27.8026905829596, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788644, Length=236, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081834, Length=240, Percent_Identity=29.5833333333333, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=27.2300469483568, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=29.3388429752066, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081782, Length=241, Percent_Identity=26.1410788381743, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786345, Length=262, Percent_Identity=29.7709923664122, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87082267, Length=248, Percent_Identity=27.4193548387097, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87082268, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788450, Length=227, Percent_Identity=27.7533039647577, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=25.2252252252252, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI48994997, Length=221, Percent_Identity=28.0542986425339, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786398, Length=211, Percent_Identity=27.9620853080569, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789864, Length=236, Percent_Identity=27.5423728813559, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1786803, Length=261, Percent_Identity=27.5862068965517, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788165, Length=199, Percent_Identity=29.6482412060301, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787105, Length=309, Percent_Identity=24.9190938511327, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=28.4313725490196, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789586, Length=292, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI145693107, Length=218, Percent_Identity=28.8990825688073, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=26.6968325791855, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787143, Length=214, Percent_Identity=28.0373831775701, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787759, Length=257, Percent_Identity=28.0155642023346, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=240, Percent_Identity=27.5, Blast_Score=81, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983516, Length=244, Percent_Identity=27.0491803278689, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983510, Length=244, Percent_Identity=27.0491803278689, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=244, Percent_Identity=27.0491803278689, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=230, Percent_Identity=28.2608695652174, Blast_Score=72, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17543740, Length=231, Percent_Identity=26.8398268398268, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI221512771, Length=247, Percent_Identity=26.3157894736842, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=28.8288288288288, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648314, Length=245, Percent_Identity=24.4897959183673, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI116007184, Length=252, Percent_Identity=24.2063492063492, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17136662, Length=215, Percent_Identity=29.3023255813954, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221500365, Length=252, Percent_Identity=24.2063492063492, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24659289, Length=215, Percent_Identity=26.9767441860465, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015862
- InterPro:   IPR015861
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.17 [H]

Molecular weight: Translated: 56972; Mature: 56972

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEHTTTEHTQAEQARKVALAVLDVSKTYGATRALDRVSLKVTTGAIHGLMGGNGSGKST
CCCCCCCHHHHHHHHHHHHHHEEECHHHCCHHHHHHHEEEEEEHHHHHHCCCCCCCCHHH
LIKMLAGVVTPDEGKLALNGDWIDARSHTPSRAKASGLHFVHQQNSTFPDLSVAENLALG
HHHHHHHCCCCCCCEEEECCCEEECCCCCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHC
RGFESTAVKSINWRAQKARARQVLDRFEIDVAADAHLVRLSPAAQMMVAIARALQDQDDT
CCCCHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCEEEEECHHHHHHHHHHHHHCCCCCH
AERGVLVLDEPTASLPKHEVDVLLTALRKYAADGQTIIYVSHRLEEVTAITNEVTVLRNG
HHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCEEEEECC
SVASRLTGAAISHDTLVAGITGSASAQPALRPRRGNDVVASGVPLSQVAGSRETALTLRR
CHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCHHHHHHHH
RTATGLKKEMLLVRAGEIVGIAGLLGSGRSRMLKQIFGAAHRDDFEVAVRSGTVPSSDMR
HHHHCHHHHHHHEECCCCEEEHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
TSMKRGLALVPENRLREAALPELSIAENLSITSLSEHARAGWIRPSRERKAAKRLIQEFG
HHHHCCEEECCHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
VRAPSTTAPLTSLSGGNQQKVILARWLQRRPDVLLLDEPTQGVDIGARNEIHELVRAAAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
AGTAVLVVSSDFGELAALAQRAVVISGGEIVDSVDGPLTEDILNDIVYAQEKAL
CCCEEEEEECCHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNEHTTTEHTQAEQARKVALAVLDVSKTYGATRALDRVSLKVTTGAIHGLMGGNGSGKST
CCCCCCCHHHHHHHHHHHHHHEEECHHHCCHHHHHHHEEEEEEHHHHHHCCCCCCCCHHH
LIKMLAGVVTPDEGKLALNGDWIDARSHTPSRAKASGLHFVHQQNSTFPDLSVAENLALG
HHHHHHHCCCCCCCEEEECCCEEECCCCCCCCHHHCCEEEEECCCCCCCCHHHHHHHHHC
RGFESTAVKSINWRAQKARARQVLDRFEIDVAADAHLVRLSPAAQMMVAIARALQDQDDT
CCCCHHHHHHCCHHHHHHHHHHHHHHHCCEEECCCEEEEECHHHHHHHHHHHHHCCCCCH
AERGVLVLDEPTASLPKHEVDVLLTALRKYAADGQTIIYVSHRLEEVTAITNEVTVLRNG
HHCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHCEEEEECC
SVASRLTGAAISHDTLVAGITGSASAQPALRPRRGNDVVASGVPLSQVAGSRETALTLRR
CHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHCCCCHHHHHHHH
RTATGLKKEMLLVRAGEIVGIAGLLGSGRSRMLKQIFGAAHRDDFEVAVRSGTVPSSDMR
HHHHCHHHHHHHEECCCCEEEHHHHCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHH
TSMKRGLALVPENRLREAALPELSIAENLSITSLSEHARAGWIRPSRERKAAKRLIQEFG
HHHHCCEEECCHHHHHHHCCCCCHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
VRAPSTTAPLTSLSGGNQQKVILARWLQRRPDVLLLDEPTQGVDIGARNEIHELVRAAAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHC
AGTAVLVVSSDFGELAALAQRAVVISGGEIVDSVDGPLTEDILNDIVYAQEKAL
CCCEEEEEECCHHHHHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA