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The map label for this gene is rbsC [H]

Identifier: 119714866

GI number: 119714866

Start: 644690

End: 645766

Strand: Reverse

Name: rbsC [H]

Synonym: Noca_0610

Alternate gene names: 119714866

Gene position: 645766-644690 (Counterclockwise)

Preceding gene: 119714867

Following gene: 119714865

Centisome position: 12.95

GC content: 63.51

Gene sequence:

>1077_bases
ATGAGTCACACGCAAGACACCACCGACGCGCCCGTCGCGTCACCGGACGCCGAGACGTTGCCGGCTCCTACAGGCGTCGC
CGAAGCGGAGCAGAAGCGCAAGGCTGCGCGAGCCCGCACTGGCAAGGCACGCTTCGTGGACTTCCTTGAGGCCTATGCTC
TCCTGGTCCTCCTGGTCGTGATTGCCCTGTTCTTCTGCTTCTGGCCGGAGACGTCATCCACGTTTCCCACCGTAGCCAAC
ATGCGCATCCTGCTTGCCAGCCAGGCTGTCATTGGCGTGATCTCGCTCGGACTGCTGCTCCCGCTCCTCTGCCAAGAGTT
CGACCTCTCCGTCGGCAACATCGCGGGCCTCGCCGCCATCGTGGTGGCGGCATACGTCTCATCCGAAGGCAATGTGCTGG
CTGCGGTAGTCCTCGCGCTGACCATCGGGCTTGCGATCGGTGCGGTCAACGCTCTGATCGTCACCCGGCTGCATGTCAAC
GGAGTCATTGCGACCTTGGGTATGTCCACGATCCTGGGGGGCATCGTCCTCCAGCGCACCGGCGGCCTCGCGCCTGCGAG
CGACATCCCCCAGTCTCTCACCAACTTCGGAACGGGACTCGTGGCCGGCGTTCCGATCATCTTCATCACCCTCCTCGTGA
TCGCGGGTATCACCTACTTCGTGCTCAATCACACTTCTCTGGGTCGCCAGATCTACGCTGTGGGCTCCAACATGGAAGCT
GCGAAGCTTGTTGGCCTCCGCACTGATGGTCTCCGCGCGGTGACGTTCGCCGCCGGGGGGCTTCTCTGCGGATTGGGTGG
TCTCCTGTATGTCTCCCGCGCGGGCGGTGCCTCGCCCAACGTCGGAATGACCTTCACGCTGCCGGCATTCGCAGCGGCGT
TCTTGAGTGCCGCGTCGGTTCGTCCAGGGCGTTTCAACGTCTGGGGCACGATCATCGCTGTCTACTTCCTCGCCGTACTG
AACAATGGGCTGAGCCTGGCCGGGGTTGATCCCTACGTGAACGACTATGTGAACGGTGGCGCTCTTATCGCCGGGGTCGC
GTTGGCCACCGTGCTGTATCGCCGACGGACGACCTGA

Upstream 100 bases:

>100_bases
GCGCCGTGGTCATCAGCGGCGGCGAGATCGTCGACAGCGTCGACGGGCCTCTGACTGAGGACATCCTTAACGACATCGTG
TACGCACAGGAGAAGGCATT

Downstream 100 bases:

>100_bases
TCGTGACGACCGGAATCGACCACGGTGCCGAGCATCCTGGCGACCCCTTCCAGAACCCAGCGCTGGTCAACACCACGGAT
GGCGTCATCACCGTCTGGTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSHTQDTTDAPVASPDAETLPAPTGVAEAEQKRKAARARTGKARFVDFLEAYALLVLLVVIALFFCFWPETSSTFPTVAN
MRILLASQAVIGVISLGLLLPLLCQEFDLSVGNIAGLAAIVVAAYVSSEGNVLAAVVLALTIGLAIGAVNALIVTRLHVN
GVIATLGMSTILGGIVLQRTGGLAPASDIPQSLTNFGTGLVAGVPIIFITLLVIAGITYFVLNHTSLGRQIYAVGSNMEA
AKLVGLRTDGLRAVTFAAGGLLCGLGGLLYVSRAGGASPNVGMTFTLPAFAAAFLSAASVRPGRFNVWGTIIAVYFLAVL
NNGLSLAGVDPYVNDYVNGGALIAGVALATVLYRRRTT

Sequences:

>Translated_358_residues
MSHTQDTTDAPVASPDAETLPAPTGVAEAEQKRKAARARTGKARFVDFLEAYALLVLLVVIALFFCFWPETSSTFPTVAN
MRILLASQAVIGVISLGLLLPLLCQEFDLSVGNIAGLAAIVVAAYVSSEGNVLAAVVLALTIGLAIGAVNALIVTRLHVN
GVIATLGMSTILGGIVLQRTGGLAPASDIPQSLTNFGTGLVAGVPIIFITLLVIAGITYFVLNHTSLGRQIYAVGSNMEA
AKLVGLRTDGLRAVTFAAGGLLCGLGGLLYVSRAGGASPNVGMTFTLPAFAAAFLSAASVRPGRFNVWGTIIAVYFLAVL
NNGLSLAGVDPYVNDYVNGGALIAGVALATVLYRRRTT
>Mature_357_residues
SHTQDTTDAPVASPDAETLPAPTGVAEAEQKRKAARARTGKARFVDFLEAYALLVLLVVIALFFCFWPETSSTFPTVANM
RILLASQAVIGVISLGLLLPLLCQEFDLSVGNIAGLAAIVVAAYVSSEGNVLAAVVLALTIGLAIGAVNALIVTRLHVNG
VIATLGMSTILGGIVLQRTGGLAPASDIPQSLTNFGTGLVAGVPIIFITLLVIAGITYFVLNHTSLGRQIYAVGSNMEAA
KLVGLRTDGLRAVTFAAGGLLCGLGGLLYVSRAGGASPNVGMTFTLPAFAAAFLSAASVRPGRFNVWGTIIAVYFLAVLN
NGLSLAGVDPYVNDYVNGGALIAGVALATVLYRRRTT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=298, Percent_Identity=34.2281879194631, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=29.2682926829268, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788471, Length=336, Percent_Identity=30.0595238095238, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1787793, Length=274, Percent_Identity=27.7372262773723, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788896, Length=343, Percent_Identity=26.2390670553936, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693152, Length=305, Percent_Identity=26.2295081967213, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=289, Percent_Identity=27.681660899654, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=33.8235294117647, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=27.4509803921569, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36859; Mature: 36727

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHTQDTTDAPVASPDAETLPAPTGVAEAEQKRKAARARTGKARFVDFLEAYALLVLLVV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IALFFCFWPETSSTFPTVANMRILLASQAVIGVISLGLLLPLLCQEFDLSVGNIAGLAAI
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VVAAYVSSEGNVLAAVVLALTIGLAIGAVNALIVTRLHVNGVIATLGMSTILGGIVLQRT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGLAPASDIPQSLTNFGTGLVAGVPIIFITLLVIAGITYFVLNHTSLGRQIYAVGSNMEA
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCH
AKLVGLRTDGLRAVTFAAGGLLCGLGGLLYVSRAGGASPNVGMTFTLPAFAAAFLSAASV
HHHEEECCCCCEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEHHHHHHHHHHHHCC
RPGRFNVWGTIIAVYFLAVLNNGLSLAGVDPYVNDYVNGGALIAGVALATVLYRRRTT
CCCCCHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SHTQDTTDAPVASPDAETLPAPTGVAEAEQKRKAARARTGKARFVDFLEAYALLVLLVV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
IALFFCFWPETSSTFPTVANMRILLASQAVIGVISLGLLLPLLCQEFDLSVGNIAGLAAI
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
VVAAYVSSEGNVLAAVVLALTIGLAIGAVNALIVTRLHVNGVIATLGMSTILGGIVLQRT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GGLAPASDIPQSLTNFGTGLVAGVPIIFITLLVIAGITYFVLNHTSLGRQIYAVGSNMEA
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCCCCH
AKLVGLRTDGLRAVTFAAGGLLCGLGGLLYVSRAGGASPNVGMTFTLPAFAAAFLSAASV
HHHEEECCCCCEEHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEHHHHHHHHHHHHCC
RPGRFNVWGTIIAVYFLAVLNNGLSLAGVDPYVNDYVNGGALIAGVALATVLYRRRTT
CCCCCHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]