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The map label for this gene is yodT [H]

Identifier: 119386505

GI number: 119386505

Start: 933412

End: 934737

Strand: Direct

Name: yodT [H]

Synonym: Pden_3798

Alternate gene names: 119386505

Gene position: 933412-934737 (Clockwise)

Preceding gene: 119386503

Following gene: 119386506

Centisome position: 53.95

GC content: 69.08

Gene sequence:

>1326_bases
ATGACCAGGATTCTTCACCGCTCGATTGCAGCGGCATTGCCGCGCGCGGTCTCGGGGCAGGGCGTCCATATCGGCGATGC
CGAGGGGCGCAGCTATATCGACGGCTCGGGGGGTGCGGCGGTCAGTTGCCTGGGCCACGGCAATGCCGAGGTGCTGGAGG
CGATGCGCGCCCAGATGGATCGCATCGCCTATGCCCATACCTCGTTCTTCACCACCGATGCCGCGGAATCGCTGGCCGAG
CGGCTGGTGCGGCTGGCCCCCGAGGGGCTGGACTATGTCTATCCGGTCTCGGGCGGTTCCGAGGCGGTCGAGGCGGCGCT
GAAGATGGCGCGGCAGTATTTCGTCGAGATCGGCCAGCCGCAGCGGCGCCATATCATCGCCCGGCGGCAGAGCTATCACG
GCAACACCATCGGCGCGCTGGCCGCGGGCGGCAATGCCTGGCGCCGCGCGCAGTTCCAGCCGATCCTGCCCGAGACGCAT
CACGTCTCGCCCTGCTATGCCTATCGCGACCAGCGCCCGGACGAGACGGTCGAGGATTACGCCGCGCGGCTGGCCGCGGA
GCTGGAGGCCAGGATCATCGAGCTCGGCCCGGATCAGGTGATCGCTTTCGTGGCCGAGCCGGTGGTCGGCGCCACCATGG
GCGCGGTGCCGGCGGTGCCGGGCTATTTCCGCCGCATCCGCGAGGTTTGCGACCGCCATGGCGTGCTGCTGATCCTGGAC
GAGGTGATGTGCGGCATGGGGCGCACCGGCTCGATCTTCGCCTGCGCGGCCGAGGGCGTGCGTCCCGACCTGGTCACCAT
CGCCAAGGGCTTGGGGGGCGGATACCAGCCCATCGGCGCGGTGATGCTGTCCGAGCGCATCTATCGCGCCTTTGCCGACG
GGTCCGGCCTGTTCCAGCACGGCCATACCTATATCGGCCATCCGGTCGCTGCCGCTGCCGCCGACAAGGTGGTCGAGATC
CTGTCGCGCCCCGGGATGATGGAGCATGTGCAGGCCATGGGAGAGCGCCTGCAATCCGGCCTCGACGCTGCGCTGGGGCA
ATCGCCCCATGTCGGCGACATTCGGGGCAGGGGGTTGTTCCGGGGCATCGAGCTTGTCGCCGACAAGGACGACAAGGCGC
CCTTCGATCCCGCCCGCCGCATCCATGCGCGCGTCAAGAAAGAGGCGATGGCGCGCGGCCTGCTGTGCTATCCGATGGGC
GGGACCATCGACGGGGTGCGCGGCGACCATGTCCTGCTGGCGCCGCCCTATATCATCCAGCCCGAGGAAATCGACCAGAT
CGTCGACCGTCTTGCCGGCGCCATCGCCGCCGCGACGGCGGGGTAG

Upstream 100 bases:

>100_bases
ACTTAGTTCGTAAAACAATCGTTGCAATGTGGAATCGATTCTGGCACGAATCGTCCAGGGCGGCATTGCCGCGATTCCCT
TGCAGATACGGGACAGACGA

Downstream 100 bases:

>100_bases
GGCCGCCATGGCGCCGCGCATCGCCTTTGCCGGGTTCAACCTGGAATCGGTCAGTACCGTCCCGCAACGGGTCGAGCTGG
CCGAGTTCCAGCGCGTCTGC

Product: hypothetical protein

Products: L-glutamate; N2-succinylglutamic-semialdehyde [C]

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MTRILHRSIAAALPRAVSGQGVHIGDAEGRSYIDGSGGAAVSCLGHGNAEVLEAMRAQMDRIAYAHTSFFTTDAAESLAE
RLVRLAPEGLDYVYPVSGGSEAVEAALKMARQYFVEIGQPQRRHIIARRQSYHGNTIGALAAGGNAWRRAQFQPILPETH
HVSPCYAYRDQRPDETVEDYAARLAAELEARIIELGPDQVIAFVAEPVVGATMGAVPAVPGYFRRIREVCDRHGVLLILD
EVMCGMGRTGSIFACAAEGVRPDLVTIAKGLGGGYQPIGAVMLSERIYRAFADGSGLFQHGHTYIGHPVAAAAADKVVEI
LSRPGMMEHVQAMGERLQSGLDAALGQSPHVGDIRGRGLFRGIELVADKDDKAPFDPARRIHARVKKEAMARGLLCYPMG
GTIDGVRGDHVLLAPPYIIQPEEIDQIVDRLAGAIAAATAG

Sequences:

>Translated_441_residues
MTRILHRSIAAALPRAVSGQGVHIGDAEGRSYIDGSGGAAVSCLGHGNAEVLEAMRAQMDRIAYAHTSFFTTDAAESLAE
RLVRLAPEGLDYVYPVSGGSEAVEAALKMARQYFVEIGQPQRRHIIARRQSYHGNTIGALAAGGNAWRRAQFQPILPETH
HVSPCYAYRDQRPDETVEDYAARLAAELEARIIELGPDQVIAFVAEPVVGATMGAVPAVPGYFRRIREVCDRHGVLLILD
EVMCGMGRTGSIFACAAEGVRPDLVTIAKGLGGGYQPIGAVMLSERIYRAFADGSGLFQHGHTYIGHPVAAAAADKVVEI
LSRPGMMEHVQAMGERLQSGLDAALGQSPHVGDIRGRGLFRGIELVADKDDKAPFDPARRIHARVKKEAMARGLLCYPMG
GTIDGVRGDHVLLAPPYIIQPEEIDQIVDRLAGAIAAATAG
>Mature_440_residues
TRILHRSIAAALPRAVSGQGVHIGDAEGRSYIDGSGGAAVSCLGHGNAEVLEAMRAQMDRIAYAHTSFFTTDAAESLAER
LVRLAPEGLDYVYPVSGGSEAVEAALKMARQYFVEIGQPQRRHIIARRQSYHGNTIGALAAGGNAWRRAQFQPILPETHH
VSPCYAYRDQRPDETVEDYAARLAAELEARIIELGPDQVIAFVAEPVVGATMGAVPAVPGYFRRIREVCDRHGVLLILDE
VMCGMGRTGSIFACAAEGVRPDLVTIAKGLGGGYQPIGAVMLSERIYRAFADGSGLFQHGHTYIGHPVAAAAADKVVEIL
SRPGMMEHVQAMGERLQSGLDAALGQSPHVGDIRGRGLFRGIELVADKDDKAPFDPARRIHARVKKEAMARGLLCYPMGG
TIDGVRGDHVLLAPPYIIQPEEIDQIVDRLAGAIAAATAG

Specific function: Catalyzes The Transmination Of N(2)-Succinylornithine And Alpha-Ketoglutarate Into N(2)-Succinylglutamate Semialdehyde And Glutamate. Can Also Act As A Acetylornithine Aminotransferase. [C]

COG id: COG0161

COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4557809, Length=430, Percent_Identity=28.8372093023256, Blast_Score=157, Evalue=2e-38,
Organism=Homo sapiens, GI13994255, Length=438, Percent_Identity=28.5388127853881, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI37574042, Length=426, Percent_Identity=28.8732394366197, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI226442705, Length=426, Percent_Identity=28.6384976525822, Blast_Score=128, Evalue=9e-30,
Organism=Homo sapiens, GI226442709, Length=397, Percent_Identity=29.2191435768262, Blast_Score=125, Evalue=1e-28,
Organism=Homo sapiens, GI284507298, Length=344, Percent_Identity=29.3604651162791, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI24119277, Length=416, Percent_Identity=27.6442307692308, Blast_Score=122, Evalue=5e-28,
Organism=Escherichia coli, GI1788044, Length=419, Percent_Identity=32.2195704057279, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1789759, Length=420, Percent_Identity=32.3809523809524, Blast_Score=185, Evalue=5e-48,
Organism=Escherichia coli, GI145693181, Length=413, Percent_Identity=31.2348668280872, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1789016, Length=429, Percent_Identity=30.3030303030303, Blast_Score=164, Evalue=1e-41,
Organism=Escherichia coli, GI1786991, Length=438, Percent_Identity=28.310502283105, Blast_Score=161, Evalue=9e-41,
Organism=Escherichia coli, GI1787560, Length=423, Percent_Identity=30.0236406619385, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1786349, Length=324, Percent_Identity=30.8641975308642, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI25144271, Length=420, Percent_Identity=28.0952380952381, Blast_Score=162, Evalue=4e-40,
Organism=Caenorhabditis elegans, GI32564660, Length=449, Percent_Identity=27.8396436525612, Blast_Score=145, Evalue=3e-35,
Organism=Caenorhabditis elegans, GI71992977, Length=366, Percent_Identity=29.5081967213115, Blast_Score=132, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI25144274, Length=305, Percent_Identity=28.8524590163934, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17541228, Length=457, Percent_Identity=23.6323851203501, Blast_Score=92, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6324432, Length=423, Percent_Identity=28.6052009456265, Blast_Score=167, Evalue=2e-42,
Organism=Saccharomyces cerevisiae, GI6323470, Length=427, Percent_Identity=27.6346604215457, Blast_Score=139, Evalue=7e-34,
Organism=Saccharomyces cerevisiae, GI6324386, Length=446, Percent_Identity=26.457399103139, Blast_Score=129, Evalue=1e-30,
Organism=Drosophila melanogaster, GI21357415, Length=431, Percent_Identity=28.538283062645, Blast_Score=161, Evalue=7e-40,
Organism=Drosophila melanogaster, GI21356575, Length=427, Percent_Identity=30.2107728337237, Blast_Score=145, Evalue=7e-35,
Organism=Drosophila melanogaster, GI28574759, Length=432, Percent_Identity=27.5462962962963, Blast_Score=123, Evalue=3e-28,
Organism=Drosophila melanogaster, GI161085790, Length=431, Percent_Identity=26.6821345707657, Blast_Score=121, Evalue=8e-28,
Organism=Drosophila melanogaster, GI281366494, Length=385, Percent_Identity=22.5974025974026, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24667139, Length=385, Percent_Identity=22.5974025974026, Blast_Score=86, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24667143, Length=385, Percent_Identity=22.5974025974026, Blast_Score=86, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005814
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00202 Aminotran_3 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 47180; Mature: 47048

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00600 AA_TRANSFER_CLASS_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRILHRSIAAALPRAVSGQGVHIGDAEGRSYIDGSGGAAVSCLGHGNAEVLEAMRAQMD
CCHHHHHHHHHHCCHHCCCCCEEEECCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHH
RIAYAHTSFFTTDAAESLAERLVRLAPEGLDYVYPVSGGSEAVEAALKMARQYFVEIGQP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC
QRRHIIARRQSYHGNTIGALAAGGNAWRRAQFQPILPETHHVSPCYAYRDQRPDETVEDY
HHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHH
AARLAAELEARIIELGPDQVIAFVAEPVVGATMGAVPAVPGYFRRIREVCDRHGVLLILD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEEH
EVMCGMGRTGSIFACAAEGVRPDLVTIAKGLGGGYQPIGAVMLSERIYRAFADGSGLFQH
HHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHC
GHTYIGHPVAAAAADKVVEILSRPGMMEHVQAMGERLQSGLDAALGQSPHVGDIRGRGLF
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RGIELVADKDDKAPFDPARRIHARVKKEAMARGLLCYPMGGTIDGVRGDHVLLAPPYIIQ
HHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCEEC
PEEIDQIVDRLAGAIAAATAG
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRILHRSIAAALPRAVSGQGVHIGDAEGRSYIDGSGGAAVSCLGHGNAEVLEAMRAQMD
CHHHHHHHHHHCCHHCCCCCEEEECCCCCCEECCCCCCEEEEECCCCHHHHHHHHHHHH
RIAYAHTSFFTTDAAESLAERLVRLAPEGLDYVYPVSGGSEAVEAALKMARQYFVEIGQP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCC
QRRHIIARRQSYHGNTIGALAAGGNAWRRAQFQPILPETHHVSPCYAYRDQRPDETVEDY
HHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHH
AARLAAELEARIIELGPDQVIAFVAEPVVGATMGAVPAVPGYFRRIREVCDRHGVLLILD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCEEEEEH
EVMCGMGRTGSIFACAAEGVRPDLVTIAKGLGGGYQPIGAVMLSERIYRAFADGSGLFQH
HHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHC
GHTYIGHPVAAAAADKVVEILSRPGMMEHVQAMGERLQSGLDAALGQSPHVGDIRGRGLF
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RGIELVADKDDKAPFDPARRIHARVKKEAMARGLLCYPMGGTIDGVRGDHVLLAPPYIIQ
HHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCCCEEC
PEEIDQIVDRLAGAIAAATAG
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N-alpha-acetylornithine; 2-oxoglutarate [C]

Specific reaction: N-alpha-acetylornithine + 2-oxoglutarate = N-acetylglutamate semialdehyde + L-glutamate N2-succinylornithine + 2-oxoglutarate = N2-succinylglutamic-semialdehyde + L-glutamate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]