Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119386492

Identifier: 119386492

GI number: 119386492

Start: 920603

End: 921682

Strand: Direct

Name: 119386492

Synonym: Pden_3785

Alternate gene names: NA

Gene position: 920603-921682 (Clockwise)

Preceding gene: 119386491

Following gene: 119386493

Centisome position: 53.21

GC content: 72.31

Gene sequence:

>1080_bases
ATGAGCCCGCGCTTCCAGCTTTCCGACCTGCGCGTGCCGGTGATCCAGGCGCCGATGGCCGGCACTGCGACGCCGCATCT
TGCCGCCGAGGTCGGCCGGGCAGGGGGGCTGGGTTCGCTGGGACTGGGTGCCTCGAACGCCGCGCAGGCCGCCGCCATGA
TGGCCGAGACGCGCGAGCGGCTGGGCTCGGGCCGCTATGGCGTCAACCTGTTCTGCCATCGTCCCGCGCAGGCCGATGCC
GCGCGCGAGGCGGGCTGGCTCGATTATCTTGCGCCCGAGTTCCACCGCTTCGATGCCGAGCCTCCGGCCCGGATCGAGGA
GATCTATCGCAGCTTCGTCGAGGATGACGACATGCTGCGCGCGGTGCTGGCGGCGCAGCCGGCGCTGGTCAGTTTTCATT
TCGGCCTGCCTTCGGCCGAGCGTATCGCCGCCCTGCGCGACGGCGGCGCCGTGCTGGCGGCGACCGCGACCTCGCGGGCC
GAGGCGCTGGCGATCCGCGAGGCGGGGCTCGACCTGATCGTCGCGCAGGGCTACGAGGCAGGCGGGCATCGCGGCATCTT
CGATCCCGACGGTGCCGACGAGCGCCTGTCGACCCAGGCATTGCTGCCCGAATTGCTGGACCTTGGCCTGCCGGTGATCG
CGGCCGGCGGCATCATGGAGGGCGCGGATGCGGCGCGGCACCTCGCCGCGGGGGCGGCGGCGGTGCAGATGGGCACGGCT
TTCGTCGCCTGCCCTGAATCGGCCGCGAATGACGCGTATCGCAACCGACTGGCCGGGGCGAAGTCGGGCGACACGGTGAT
GACCCGCGTCATTTCGGGCCGTCCGGCGCGCGGGCTGGCCAACCGGCTGACCGCTCTTGGCGAGGCGGCCGAGGCGCCGG
CCCTGCCGGACTATCCGATCACCTACGACGCGGCGAAGCGGCTTCATGCGGTGGCCGGCGGTTCGGATTACGCGGCGCAA
TGGGCGGGGGCCGAGGTGTCGCGCGCCCGTCCGATGCCGGCGGCAGACCTCGTGGCGCTGCTGGAGCGCGAGATTCAGGC
GCATTTCCCCGGTCTCGGCGCTTGCCAGAAGGGCCGATGA

Upstream 100 bases:

>100_bases
CGATGCGCCCGGCCGAGGATGCGCTGCTGCTCGACACCACCGAGATGAGCATCGACGAGGCCGTGGCGCGCGCCATCGCC
TGCGCCAAGGAGGCCGGAGC

Downstream 100 bases:

>100_bases
GGGCTATATCGCGCCCGTCAGGGTAAGGGATGGGGCCAGAACAGGCCGCTTCGACAGGGTCGGGCGCATGCCGCGACCCT
TTGCGCTTATCCCGACACCT

Product: 2-nitropropane dioxygenase, NPD

Products: NA

Alternate protein names: Nitroalkane oxidase [H]

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADA
AREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRA
EALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA
FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQ
WAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR

Sequences:

>Translated_359_residues
MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADA
AREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRA
EALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA
FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQ
WAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR
>Mature_358_residues
SPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADAA
REAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAE
ALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTAF
VACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQW
AGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR

Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6322609, Length=349, Percent_Identity=33.2378223495702, Blast_Score=153, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: =1.13.12.16 [H]

Molecular weight: Translated: 37291; Mature: 37159

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRER
CCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LGSGRYGVNLFCHRPAQADAAREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLR
HCCCCCCEEEEEECCCHHHHHHHCCCHHHHCHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
AVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAEALAIREAGLDLIVAQGYEA
HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCC
GGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCE
FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPI
EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
TYDAAKRLHAVAGGSDYAAQWAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR
CHHHHHHHHHHCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRER
CCCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LGSGRYGVNLFCHRPAQADAAREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLR
HCCCCCCEEEEEECCCHHHHHHHCCCHHHHCHHHHHCCCCCCHHHHHHHHHHHCCHHHHH
AVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAEALAIREAGLDLIVAQGYEA
HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCC
GGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCE
FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPI
EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
TYDAAKRLHAVAGGSDYAAQWAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR
CHHHHHHHHHHCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA