| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
Click here to switch to the map view.
The map label for this gene is 119386492
Identifier: 119386492
GI number: 119386492
Start: 920603
End: 921682
Strand: Direct
Name: 119386492
Synonym: Pden_3785
Alternate gene names: NA
Gene position: 920603-921682 (Clockwise)
Preceding gene: 119386491
Following gene: 119386493
Centisome position: 53.21
GC content: 72.31
Gene sequence:
>1080_bases ATGAGCCCGCGCTTCCAGCTTTCCGACCTGCGCGTGCCGGTGATCCAGGCGCCGATGGCCGGCACTGCGACGCCGCATCT TGCCGCCGAGGTCGGCCGGGCAGGGGGGCTGGGTTCGCTGGGACTGGGTGCCTCGAACGCCGCGCAGGCCGCCGCCATGA TGGCCGAGACGCGCGAGCGGCTGGGCTCGGGCCGCTATGGCGTCAACCTGTTCTGCCATCGTCCCGCGCAGGCCGATGCC GCGCGCGAGGCGGGCTGGCTCGATTATCTTGCGCCCGAGTTCCACCGCTTCGATGCCGAGCCTCCGGCCCGGATCGAGGA GATCTATCGCAGCTTCGTCGAGGATGACGACATGCTGCGCGCGGTGCTGGCGGCGCAGCCGGCGCTGGTCAGTTTTCATT TCGGCCTGCCTTCGGCCGAGCGTATCGCCGCCCTGCGCGACGGCGGCGCCGTGCTGGCGGCGACCGCGACCTCGCGGGCC GAGGCGCTGGCGATCCGCGAGGCGGGGCTCGACCTGATCGTCGCGCAGGGCTACGAGGCAGGCGGGCATCGCGGCATCTT CGATCCCGACGGTGCCGACGAGCGCCTGTCGACCCAGGCATTGCTGCCCGAATTGCTGGACCTTGGCCTGCCGGTGATCG CGGCCGGCGGCATCATGGAGGGCGCGGATGCGGCGCGGCACCTCGCCGCGGGGGCGGCGGCGGTGCAGATGGGCACGGCT TTCGTCGCCTGCCCTGAATCGGCCGCGAATGACGCGTATCGCAACCGACTGGCCGGGGCGAAGTCGGGCGACACGGTGAT GACCCGCGTCATTTCGGGCCGTCCGGCGCGCGGGCTGGCCAACCGGCTGACCGCTCTTGGCGAGGCGGCCGAGGCGCCGG CCCTGCCGGACTATCCGATCACCTACGACGCGGCGAAGCGGCTTCATGCGGTGGCCGGCGGTTCGGATTACGCGGCGCAA TGGGCGGGGGCCGAGGTGTCGCGCGCCCGTCCGATGCCGGCGGCAGACCTCGTGGCGCTGCTGGAGCGCGAGATTCAGGC GCATTTCCCCGGTCTCGGCGCTTGCCAGAAGGGCCGATGA
Upstream 100 bases:
>100_bases CGATGCGCCCGGCCGAGGATGCGCTGCTGCTCGACACCACCGAGATGAGCATCGACGAGGCCGTGGCGCGCGCCATCGCC TGCGCCAAGGAGGCCGGAGC
Downstream 100 bases:
>100_bases GGGCTATATCGCGCCCGTCAGGGTAAGGGATGGGGCCAGAACAGGCCGCTTCGACAGGGTCGGGCGCATGCCGCGACCCT TTGCGCTTATCCCGACACCT
Product: 2-nitropropane dioxygenase, NPD
Products: NA
Alternate protein names: Nitroalkane oxidase [H]
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADA AREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRA EALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQ WAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR
Sequences:
>Translated_359_residues MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADA AREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRA EALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQ WAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR >Mature_358_residues SPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRERLGSGRYGVNLFCHRPAQADAA REAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLRAVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAE ALAIREAGLDLIVAQGYEAGGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTAF VACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPITYDAAKRLHAVAGGSDYAAQW AGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR
Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]
COG id: COG2070
COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nitronate monooxygenase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6322609, Length=349, Percent_Identity=33.2378223495702, Blast_Score=153, Evalue=4e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004136 - InterPro: IPR013785 [H]
Pfam domain/function: PF03060 NPD [H]
EC number: =1.13.12.16 [H]
Molecular weight: Translated: 37291; Mature: 37159
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRER CCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH LGSGRYGVNLFCHRPAQADAAREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLR HCCCCCCEEEEEECCCHHHHHHHCCCHHHHCHHHHHCCCCCCHHHHHHHHHHHCCHHHHH AVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAEALAIREAGLDLIVAQGYEA HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCC GGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCE FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPI EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC TYDAAKRLHAVAGGSDYAAQWAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR CHHHHHHHHHHCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SPRFQLSDLRVPVIQAPMAGTATPHLAAEVGRAGGLGSLGLGASNAAQAAAMMAETRER CCCCCCCCCCCCCEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH LGSGRYGVNLFCHRPAQADAAREAGWLDYLAPEFHRFDAEPPARIEEIYRSFVEDDDMLR HCCCCCCEEEEEECCCHHHHHHHCCCHHHHCHHHHHCCCCCCHHHHHHHHHHHCCHHHHH AVLAAQPALVSFHFGLPSAERIAALRDGGAVLAATATSRAEALAIREAGLDLIVAQGYEA HHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCEEEEECCCCC GGHRGIFDPDGADERLSTQALLPELLDLGLPVIAAGGIMEGADAARHLAAGAAAVQMGTA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCE FVACPESAANDAYRNRLAGAKSGDTVMTRVISGRPARGLANRLTALGEAAEAPALPDYPI EEECCCHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC TYDAAKRLHAVAGGSDYAAQWAGAEVSRARPMPAADLVALLEREIQAHFPGLGACQKGR CHHHHHHHHHHCCCCHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA