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The map label for this gene is ybeY [C]

Identifier: 119386401

GI number: 119386401

Start: 842087

End: 842611

Strand: Direct

Name: ybeY [C]

Synonym: Pden_3693

Alternate gene names: 119386401

Gene position: 842087-842611 (Clockwise)

Preceding gene: 119386400

Following gene: 119386402

Centisome position: 48.67

GC content: 66.1

Gene sequence:

>525_bases
ATGCCTGACAGTGCCGACGCGCCGGAAGAGGTGCCGGAGTTCGTCGACATCGTGCTGGAGGACGACCGCTGGGAGGATGC
CGACCTGCCCGCCATGGCCGAACGCGCCGCCCGCGCGGTGGGCGAATGGCTGGGCTTGGATGCCTTTCAGGTCGTGGTCA
TGGGCTGCGACGACGCCCGCATCGCCGCGCTGAACGCCGAGTTCCGCGGCAAGCCCAAGCCCACCAACGTGCTGAGCTGG
CCCGCGGTCGAGTTCGAGGCGCGCGAGCCCGGCGCCCATCCCGAACCGCCGGGGGCCGAGGAACTGGGCGATATCGCCAT
TTCCTACGACACCTGCCTGCGCGAGGCCGAGGCGCAGGGCAAGCCCTTCGCCGATCACGCCACGCATCTTCTTGTCCATG
CCATGCTGCATCTTGCAGGATATGACCATATCGACGACGAGGATGCCGAAACCATGGAGGATGCAGAACGCTCGATCCTG
GGCAAGCTGGGCATCCCCGACCCTTATCTGGAACATGAGACATGA

Upstream 100 bases:

>100_bases
GAGGTCTTCGACGAGCGCGGCCAGCGCATCCCGCGGCGCGAGCCGCGGCTGGCCGGCGGGGGAATGGCCGGCGGAGGAGT
GGCAGGTGGGGGGCCGAGCG

Downstream 100 bases:

>100_bases
CCAACGACCGAAGTCCCGACACGCCCGTCTCCACCGAACCCGCCTCATGGGCGGATGGCACGGGCGGGGACGGGCGTGAC
CTGCCGCAATCGCGCGGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MPDSADAPEEVPEFVDIVLEDDRWEDADLPAMAERAARAVGEWLGLDAFQVVVMGCDDARIAALNAEFRGKPKPTNVLSW
PAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADHATHLLVHAMLHLAGYDHIDDEDAETMEDAERSIL
GKLGIPDPYLEHET

Sequences:

>Translated_174_residues
MPDSADAPEEVPEFVDIVLEDDRWEDADLPAMAERAARAVGEWLGLDAFQVVVMGCDDARIAALNAEFRGKPKPTNVLSW
PAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADHATHLLVHAMLHLAGYDHIDDEDAETMEDAERSIL
GKLGIPDPYLEHET
>Mature_173_residues
PDSADAPEEVPEFVDIVLEDDRWEDADLPAMAERAARAVGEWLGLDAFQVVVMGCDDARIAALNAEFRGKPKPTNVLSWP
AVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQGKPFADHATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILG
KLGIPDPYLEHET

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=149, Percent_Identity=40.2684563758389, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PARDP (A1B8B6)

Other databases:

- EMBL:   CP000490
- RefSeq:   YP_917456.1
- ProteinModelPortal:   A1B8B6
- SMR:   A1B8B6
- STRING:   A1B8B6
- GeneID:   4582245
- GenomeReviews:   CP000490_GR
- KEGG:   pde:Pden_3693
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   IAMINEE
- PhylomeDB:   A1B8B6
- ProtClustDB:   CLSK935180
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19068; Mature: 18937

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDSADAPEEVPEFVDIVLEDDRWEDADLPAMAERAARAVGEWLGLDAFQVVVMGCDDAR
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCE
IAALNAEFRGKPKPTNVLSWPAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQG
EEEECCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHCC
KPFADHATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILGKLGIPDPYLEHET
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PDSADAPEEVPEFVDIVLEDDRWEDADLPAMAERAARAVGEWLGLDAFQVVVMGCDDAR
CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHEEECCCCCE
IAALNAEFRGKPKPTNVLSWPAVEFEAREPGAHPEPPGAEELGDIAISYDTCLREAEAQG
EEEECCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCCHHHHHHEEHHHHHHHHHHHHCC
KPFADHATHLLVHAMLHLAGYDHIDDEDAETMEDAERSILGKLGIPDPYLEHET
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA