Click here to switch to the map view.

The map label for this gene is ymdB [C]

Identifier: 119386346

GI number: 119386346

Start: 788787

End: 789287

Strand: Direct

Name: ymdB [C]

Synonym: Pden_3638

Alternate gene names: 119386346

Gene position: 788787-789287 (Clockwise)

Preceding gene: 119386345

Following gene: 119386347

Centisome position: 45.59

GC content: 71.46

Gene sequence:

>501_bases
ATGCGCATCTCCACCCGGCAAGGCGACATCACCCGGCTCGCCGTCGATGCCATCGTCAATGCGGCCAATCGCACGCTGCT
GGGCGGCGGCGGCGTCGACGGCGCCATCCACCGCGCGGCCGGCCCGTTACTCCTCGAGGAATGCCGCACCCTGGGCGGCT
GCCCCACCGGCGAGGCCCGGATCACCGGGGGCTACGACCTGCCGGCAAGATACGTCATCCACGCCGTCGGCCCGGTCTGG
CAAGGCGGCATGGCGGGCGAGGACGCGCTGCTCGCCGGCGCCTACCGCCACAGCCTGCTGCTTGCGCAGGCCCACGACCT
TGCCCGGATCGCCTTCCCGGCGATCTCGACCGGCATCTACGGTTTTCCGGCCGAACGTGCCGCTCGCATCGCCGTCGCGA
CCATCCTCGACCATGCCGCCGATATCGAGGTGATCCTGGTCGGCTTCGACGGCCCCGGCCATGCGACGCTCCGGCAAGCC
GTGGAAGAGGCCCGCCGATGA

Upstream 100 bases:

>100_bases
ACCCCAGGAAGACCCGCGACGTGCTGGCGCTGAGCCTGCGCGCCAGCCTCAACGCGCCGGTCGAGCCGACCCGCTTCGGC
ATCTTCAGGATGTGACGGCC

Downstream 100 bases:

>100_bases
TTTCTCCGTTTTCCAAATACTCCACGGGGGTCCGGGGGTGTGAAACCCCCGGTGCCTCGCCCGCCACAAGAGGTGCCGGA
TGTTCCAGAAAATCCTGATC

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRISTRQGDITRLAVDAIVNAANRTLLGGGGVDGAIHRAAGPLLLEECRTLGGCPTGEARITGGYDLPARYVIHAVGPVW
QGGMAGEDALLAGAYRHSLLLAQAHDLARIAFPAISTGIYGFPAERAARIAVATILDHAADIEVILVGFDGPGHATLRQA
VEEARR

Sequences:

>Translated_166_residues
MRISTRQGDITRLAVDAIVNAANRTLLGGGGVDGAIHRAAGPLLLEECRTLGGCPTGEARITGGYDLPARYVIHAVGPVW
QGGMAGEDALLAGAYRHSLLLAQAHDLARIAFPAISTGIYGFPAERAARIAVATILDHAADIEVILVGFDGPGHATLRQA
VEEARR
>Mature_166_residues
MRISTRQGDITRLAVDAIVNAANRTLLGGGGVDGAIHRAAGPLLLEECRTLGGCPTGEARITGGYDLPARYVIHAVGPVW
QGGMAGEDALLAGAYRHSLLLAQAHDLARIAFPAISTGIYGFPAERAARIAVATILDHAADIEVILVGFDGPGHATLRQA
VEEARR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=137, Percent_Identity=62.7737226277372, Blast_Score=170, Evalue=5e-43,
Organism=Homo sapiens, GI13569840, Length=135, Percent_Identity=60.7407407407407, Blast_Score=160, Evalue=6e-40,
Organism=Homo sapiens, GI154813199, Length=135, Percent_Identity=42.2222222222222, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI207450721, Length=130, Percent_Identity=36.9230769230769, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI8923143, Length=135, Percent_Identity=35.5555555555556, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371718, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI226371716, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI226371714, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI226371712, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI226371710, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI226371706, Length=143, Percent_Identity=34.965034965035, Blast_Score=80, Evalue=7e-16,
Organism=Homo sapiens, GI20336746, Length=142, Percent_Identity=31.6901408450704, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI165377137, Length=142, Percent_Identity=28.8732394366197, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787283, Length=157, Percent_Identity=56.687898089172, Blast_Score=164, Evalue=3e-42,
Organism=Caenorhabditis elegans, GI17538214, Length=155, Percent_Identity=47.741935483871, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=131, Percent_Identity=41.9847328244275, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17296; Mature: 17296

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRISTRQGDITRLAVDAIVNAANRTLLGGGGVDGAIHRAAGPLLLEECRTLGGCPTGEAR
CCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCE
ITGGYDLPARYVIHAVGPVWQGGMAGEDALLAGAYRHSLLLAQAHDLARIAFPAISTGIY
EECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GFPAERAARIAVATILDHAADIEVILVGFDGPGHATLRQAVEEARR
CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MRISTRQGDITRLAVDAIVNAANRTLLGGGGVDGAIHRAAGPLLLEECRTLGGCPTGEAR
CCCCCCCCCHHHHHHHHHHHHHCCEEECCCCCCHHHHHHCCHHHHHHHHHHCCCCCCCCE
ITGGYDLPARYVIHAVGPVWQGGMAGEDALLAGAYRHSLLLAQAHDLARIAFPAISTGIY
EECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
GFPAERAARIAVATILDHAADIEVILVGFDGPGHATLRQAVEEARR
CCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11932238 [H]