Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119386304

Identifier: 119386304

GI number: 119386304

Start: 745691

End: 747589

Strand: Direct

Name: 119386304

Synonym: Pden_3596

Alternate gene names: NA

Gene position: 745691-747589 (Clockwise)

Preceding gene: 119386301

Following gene: 119386305

Centisome position: 43.1

GC content: 61.3

Gene sequence:

>1899_bases
ATGCGCCTTGCCGATGCGGCCACCCAGATGCAGAACTCCTTGCGCGTTGCCGGCCTTGAGGGTGCGGAACTGTCGCGCGT
CTATGACCAACTGTTCCGGTCGGCGCAGAGAAACTCGGCCCCTATCAATTCTCTGGTCGATCTTTATTCCAAACTGGCCT
TGACCCAAAAGGAATTGGGCGTCACCGGGGACGATCTGATCCGGTTTACGGATGGGATCGCGGTCGCACTCAAGGTGGCC
GGGACTGATGCAGTCAGCGCCAGCGGGTCGCTCTTGCAGCTTTCGCAGGCGCTCGGCGGTGGTGTGGTCCGGGCCGAGGA
ATTCAACTCGATTCTTGAAGGAACTCCGACGATTGCGCAGGCCGTGGCGCGCGGCTTGAAAGAGGCGAATGGTTCCGTGG
CCGAGCTTCGCAAGCTGGTGGTTGACGGTCAGGTTTCCAGCACTGCATTTTTCCGCGCTTTCGAGGCTGGATCGGGCGAG
TTGCGCCGGCAGGCTGAAACGTCGCAGACCACAGTCGGGCAGGCGTTCACGCGGCTCGGCAACAGCCTTGTGACTGTGGT
GGGCGAGTTTGACAAGGCAACGGGCGCGTCGGCAGCCCTTGCCGAGGGTATCAGCAGCTTGGGTTCCGGTCTGGATCGGT
TCGACGCCGAAGGGTTTATTTCCCAACTCCAAGACATCGCGGATGCCATTCGTGATGCTGATGAGGCCGGCAGAGACTGG
CTGAACTCAATCGGGAATTCCGACCTTTTCAAGAGCGATACCGATGCGGAAGAATGGTTCAACAGGGTCACGAACCCGGA
TGTAGGAAAGGCCCAGGACAAGATCGATCTGCTCGAACGCGAGATCGAAACCCTCCAAGCTGCCATAGAGAACAATACCC
AGATGGGCTTCGACAACAGCGAGGCTCTGTCCCGTTTGGCAGAGGTCCGCTCGGAACTTGCCGCCGTGCGCGCCGAAGCC
GCCGCGCTGCCCTCGTATTTCCCTGGGGCCAACATGATGAGCACCGGGACGTTCATCGGCTTGGATGGCTACACCCCGCC
GCCGTCTGCGCCAAGTGTCGAGCCGGTCAGCATTGCCGATCACCCAGCGGCGCCCGGCAAGGGCGGCTCCAAGGGTCGCA
AGAAGGGCGGATCTGGCGGCCGCAGCCGCAAAGAGCAACTGGATGACTACGCCAAGGAGGTAAAGGCAATCCGTGAACGC
ACTGCGGCTCTGGAAGTCGAGGCTGCGTCTCTGTTGCTAGTAGCGGAAAGCGGCGAGGATTATGGCGATGCGCTGGAATA
TGCCCGAAAGCGCGCCGAACTCCTGCACGCTGCCCAGAAGGCCGGCAAGCAGATCACCCCGGAATTGAGCGCGGAAATCG
ATCAACTCGCGCAATCCTATGTCACTGCCGGTCTGAACGCCGAACAGGCCGCCGAGAAGCTGGACCAGATCAAGGGTGCG
ACCGAGCGCGGCAAGAATGCGCTGGAAGATATGTTCGGTTCGATCATCGACGGGTCGGCCTCGGCTAAGGACGCGGTGGC
TTCTCTTCTGGCCGAGATTGCCAAGGCCCAGATCATGAAGGGGATTCTTGGCCTGCCGGGCATGGGAAGTCTTTCCAGCA
CCATCGGCGGGCTGTTGTCCTTCGATGGAGGCGGCTTCACGGGCCACGGCTCGCGCAGCGGCGGCATCGATGGCAGGGGC
GGCTTCCCCGCGATTCTACATCCCAATGAGACGGTGATTGATCATACACGCGGGCAGGGCGGCAGCTCCCCCAAGATCAC
CATCAACAACAACGCTCCAGGCGCGGTGGTGTCGGCTGACTACGCGACCAAGGACGAAGTGATCCTGACCGTCTCGCAGG
CTATCGCCTCGAACAATCGGCGCCAGTCAGACCAGCAATATCTCAGGGGTAGCCGCTGA

Upstream 100 bases:

>100_bases
GGTCCGGCGCATAACGGGGATCGCGCAGCCACTTGAAGATCAGGTTCGCGTTAGCGGATTGCTTGCCGGCGGCGTTGCTG
CACAGCAGGTGCGGCAGTAT

Downstream 100 bases:

>100_bases
TGCAGGTATCGTTTCCGTTCCCGGTCAAGCTGCAATCCTCGGTGCCGAAGCTTGAGGGGCTGCGCTTCCAGCCCTTTACG
AACATCGACAGCGAGACCTT

Product: phage tape measure protein

Products: NA

Alternate protein names: Tail Tape Measure Protein; Phage-Related Minor Tail Protein; Tail Length Tape Measure Protein; Tape Measure Domain-Containing Protein; Bacteriophage-Related Protein; Bacteriophage-Related Protein Tape Measure Domain; Prophage; Bacteriophage Protein; Bacteriophage Tail Protein; Bacteriophage Tail Tape Meausure Protein; Tail Tape Meausure Protein; Phage Protein; Tape Measure Domain Protein; Tail Component Of Prophage Protein

Number of amino acids: Translated: 632; Mature: 632

Protein sequence:

>632_residues
MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA
GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE
LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW
LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA
AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER
TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA
TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG
GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR

Sequences:

>Translated_632_residues
MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA
GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE
LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW
LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA
AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER
TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA
TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG
GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR
>Mature_632_residues
MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELGVTGDDLIRFTDGIAVALKVA
GTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQAVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGE
LRRQAETSQTTVGQAFTRLGNSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW
LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNSEALSRLAEVRSELAAVRAEA
AALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIADHPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRER
TAALEVEAASLLLVAESGEDYGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA
TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLSFDGGGFTGHGSRSGGIDGRG
GFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSADYATKDEVILTVSQAIASNNRRQSDQQYLRGSR

Specific function: Unknown

COG id: COG5281

COG function: function code S; Phage-related minor tail protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 66125; Mature: 66125

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELG
CCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
VTGDDLIRFTDGIAVALKVAGTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQ
CCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHH
AVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGELRRQAETSQTTVGQAFTRLG
HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
NSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNS
HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
EALSRLAEVRSELAAVRAEAAALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
HPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRERTAALEVEAASLLLVAESGED
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECCCCC
YGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
FDGGGFTGHGSRSGGIDGRGGFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSAD
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCCCCCCEEECC
YATKDEVILTVSQAIASNNRRQSDQQYLRGSR
CCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MRLADAATQMQNSLRVAGLEGAELSRVYDQLFRSAQRNSAPINSLVDLYSKLALTQKELG
CCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
VTGDDLIRFTDGIAVALKVAGTDAVSASGSLLQLSQALGGGVVRAEEFNSILEGTPTIAQ
CCHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCHHHH
AVARGLKEANGSVAELRKLVVDGQVSSTAFFRAFEAGSGELRRQAETSQTTVGQAFTRLG
HHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
NSLVTVVGEFDKATGASAALAEGISSLGSGLDRFDAEGFISQLQDIADAIRDADEAGRDW
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
LNSIGNSDLFKSDTDAEEWFNRVTNPDVGKAQDKIDLLEREIETLQAAIENNTQMGFDNS
HHHCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
EALSRLAEVRSELAAVRAEAAALPSYFPGANMMSTGTFIGLDGYTPPPSAPSVEPVSIAD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
HPAAPGKGGSKGRKKGGSGGRSRKEQLDDYAKEVKAIRERTAALEVEAASLLLVAESGED
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEHHEEEEEECCCCC
YGDALEYARKRAELLHAAQKAGKQITPELSAEIDQLAQSYVTAGLNAEQAAEKLDQIKGA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCH
TERGKNALEDMFGSIIDGSASAKDAVASLLAEIAKAQIMKGILGLPGMGSLSSTIGGLLS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
FDGGGFTGHGSRSGGIDGRGGFPAILHPNETVIDHTRGQGGSSPKITINNNAPGAVVSAD
CCCCCCCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCCEEEECCCCCCCEEECC
YATKDEVILTVSQAIASNNRRQSDQQYLRGSR
CCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA