Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is livK [C]

Identifier: 119386283

GI number: 119386283

Start: 724667

End: 725908

Strand: Direct

Name: livK [C]

Synonym: Pden_3574

Alternate gene names: 119386283

Gene position: 724667-725908 (Clockwise)

Preceding gene: 119386280

Following gene: 119386284

Centisome position: 41.89

GC content: 63.77

Gene sequence:

>1242_bases
ATGATCAAGACGATGGGGCGCCGACAACTGCTGAAAACCGGAACGGCGGCGGGGCTGATGACGCTGGCCGCGCCAAGCCT
TTTGCGCGCGCAGGGCGATGCGGTGGTGCTGGGCCACCTGACGCCGCGCACGGGCTTTCTGGGTCCGATGGGCGAATATG
CGGTGATGGCCGTCGATCTCGCCGTCGAGGAAATCAACGCCAACGGCGGCATCAACGGCCGCATGCTGACCGTGGTGAAG
GAGGATTCCGTCAACCCGCAGACCGCCACCACCAAGGCGGAGCGGCTGGTCGAGCGCCGCGACCTGGCGATGATCATCGG
CGAGATTTCCTCGGCTTCGGCCTTGTCCATCGCGCAGGTCACCGCGCGGGCGAACAAGCTGTTCATCAACACCGGCGCGA
ACTCGGACACGTTGCGCGGCAGCGACTGCAAGCGCACCATGTTCCACACCGAGGCGCAGAACGTCATGTATGTGAACGCC
GAGGGCCAGTATTTCCTTCAGAACGACATGGTGAAGGACAAGAAGTGGTTCATTCTCAGCTCGGATTACGCCTTCGGGCA
CGATCTGCGCCACGGTGCGCTTGGCTTCCTTGAACGGCATGGCGGGCAGGCGGTCGGCGATGAGCTGATCCCGACCGACG
CGACGGATTTCTCGTCGCATCTGCTGAACATCCGCAACCTTCAGCCCGACCTGATCGTGGTAAACCTCGCGGGCACCTCG
GGCGCCAGCTTCATGAAGCAATATGGCGAGTTCGGCCTGGATATCCCGCTGGGCGGCTTCGACTACAACAGCTCCATCGC
ATGGGCGACGGGTCCGCAGGACTTCAAGGGCACATGGCCCTGCATCTGGACCCATCAGGTGCAGACCGACGCCTCGCAGG
CTTTCGCGCAGGCGTTCCAGGCGAAATACGGCAAGCCCGCAGAAAACCAGGCTTACTCCGACTATATCGCCGTGCGCATT
GCGGCCGAGGCCATCGCGAAGACCGGCGGCACCGATACGGCCGCGCTGATCGAGTTCCTCGAAGACCCCGCGACCGAGTT
CGACATCCTCAAGGACCGCAAGGGCCGGTTCGACGCCGCCACGCACCAGCTTTTGCAAGAGGTCTATGCCGTCACCGCCC
TCGATCCGTCCGAGGTGCAGAACGAATGGGACATTTTCACCACCTCGGGGCCGCTGCCCGGAGCGGAGGTGCCGCTGGAC
GAGTTGATCAAGGGCGCGGTCGGCGGCGACTGCACGTTCTGA

Upstream 100 bases:

>100_bases
CCATTTCGATTCCAGTATGATCTATGATCACACTGATGGAGCCGGAAGTCAAGCCGGAGGAGGCGACGGCTCCGCAGGTC
TCAGGGAGGAAAAGAGTGTC

Downstream 100 bases:

>100_bases
TCCCGAAGAACCCGCAAGGGCAGGGCGCGTCCCGGCGACGCGCCCGATCATCTCTCATGCCATTGGGGATGCCTCATGAC
ATTGGTCTTTCTTTCGCAGC

Product: hypothetical protein

Products: ADP; phosphate; L-leucine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 413

Protein sequence:

>413_residues
MIKTMGRRQLLKTGTAAGLMTLAAPSLLRAQGDAVVLGHLTPRTGFLGPMGEYAVMAVDLAVEEINANGGINGRMLTVVK
EDSVNPQTATTKAERLVERRDLAMIIGEISSASALSIAQVTARANKLFINTGANSDTLRGSDCKRTMFHTEAQNVMYVNA
EGQYFLQNDMVKDKKWFILSSDYAFGHDLRHGALGFLERHGGQAVGDELIPTDATDFSSHLLNIRNLQPDLIVVNLAGTS
GASFMKQYGEFGLDIPLGGFDYNSSIAWATGPQDFKGTWPCIWTHQVQTDASQAFAQAFQAKYGKPAENQAYSDYIAVRI
AAEAIAKTGGTDTAALIEFLEDPATEFDILKDRKGRFDAATHQLLQEVYAVTALDPSEVQNEWDIFTTSGPLPGAEVPLD
ELIKGAVGGDCTF

Sequences:

>Translated_413_residues
MIKTMGRRQLLKTGTAAGLMTLAAPSLLRAQGDAVVLGHLTPRTGFLGPMGEYAVMAVDLAVEEINANGGINGRMLTVVK
EDSVNPQTATTKAERLVERRDLAMIIGEISSASALSIAQVTARANKLFINTGANSDTLRGSDCKRTMFHTEAQNVMYVNA
EGQYFLQNDMVKDKKWFILSSDYAFGHDLRHGALGFLERHGGQAVGDELIPTDATDFSSHLLNIRNLQPDLIVVNLAGTS
GASFMKQYGEFGLDIPLGGFDYNSSIAWATGPQDFKGTWPCIWTHQVQTDASQAFAQAFQAKYGKPAENQAYSDYIAVRI
AAEAIAKTGGTDTAALIEFLEDPATEFDILKDRKGRFDAATHQLLQEVYAVTALDPSEVQNEWDIFTTSGPLPGAEVPLD
ELIKGAVGGDCTF
>Mature_413_residues
MIKTMGRRQLLKTGTAAGLMTLAAPSLLRAQGDAVVLGHLTPRTGFLGPMGEYAVMAVDLAVEEINANGGINGRMLTVVK
EDSVNPQTATTKAERLVERRDLAMIIGEISSASALSIAQVTARANKLFINTGANSDTLRGSDCKRTMFHTEAQNVMYVNA
EGQYFLQNDMVKDKKWFILSSDYAFGHDLRHGALGFLERHGGQAVGDELIPTDATDFSSHLLNIRNLQPDLIVVNLAGTS
GASFMKQYGEFGLDIPLGGFDYNSSIAWATGPQDFKGTWPCIWTHQVQTDASQAFAQAFQAKYGKPAENQAYSDYIAVRI
AAEAIAKTGGTDTAALIEFLEDPATEFDILKDRKGRFDAATHQLLQEVYAVTALDPSEVQNEWDIFTTSGPLPGAEVPLD
ELIKGAVGGDCTF

Specific function: Component of an amino-acid transport system (Potential) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the leucine-binding protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 240 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001828
- InterPro:   IPR000709 [H]

Pfam domain/function: PF01094 ANF_receptor [H]

EC number: NA

Molecular weight: Translated: 44637; Mature: 44637

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKTMGRRQLLKTGTAAGLMTLAAPSLLRAQGDAVVLGHLTPRTGFLGPMGEYAVMAVDL
CCCCCCHHHHHHHCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEH
AVEEINANGGINGRMLTVVKEDSVNPQTATTKAERLVERRDLAMIIGEISSASALSIAQV
HHEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH
TARANKLFINTGANSDTLRGSDCKRTMFHTEAQNVMYVNAEGQYFLQNDMVKDKKWFILS
HHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEECCCCCCCEEEEEE
SDYAFGHDLRHGALGFLERHGGQAVGDELIPTDATDFSSHLLNIRNLQPDLIVVNLAGTS
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCC
GASFMKQYGEFGLDIPLGGFDYNSSIAWATGPQDFKGTWPCIWTHQVQTDASQAFAQAFQ
CHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
AKYGKPAENQAYSDYIAVRIAAEAIAKTGGTDTAALIEFLEDPATEFDILKDRKGRFDAA
HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHH
THQLLQEVYAVTALDPSEVQNEWDIFTTSGPLPGAEVPLDELIKGAVGGDCTF
HHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIKTMGRRQLLKTGTAAGLMTLAAPSLLRAQGDAVVLGHLTPRTGFLGPMGEYAVMAVDL
CCCCCCHHHHHHHCCHHHHHHHHCHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEH
AVEEINANGGINGRMLTVVKEDSVNPQTATTKAERLVERRDLAMIIGEISSASALSIAQV
HHEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHH
TARANKLFINTGANSDTLRGSDCKRTMFHTEAQNVMYVNAEGQYFLQNDMVKDKKWFILS
HHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEECCCCCCCEEEEEE
SDYAFGHDLRHGALGFLERHGGQAVGDELIPTDATDFSSHLLNIRNLQPDLIVVNLAGTS
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCC
GASFMKQYGEFGLDIPLGGFDYNSSIAWATGPQDFKGTWPCIWTHQVQTDASQAFAQAFQ
CHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
AKYGKPAENQAYSDYIAVRIAAEAIAKTGGTDTAALIEFLEDPATEFDILKDRKGRFDAA
HHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCHHH
THQLLQEVYAVTALDPSEVQNEWDIFTTSGPLPGAEVPLDELIKGAVGGDCTF
HHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA