Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
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Accession | NC_008687 |
Length | 1,730,097 |
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The map label for this gene is 119386251
Identifier: 119386251
GI number: 119386251
Start: 688822
End: 689940
Strand: Direct
Name: 119386251
Synonym: Pden_3540
Alternate gene names: NA
Gene position: 688822-689940 (Clockwise)
Preceding gene: 119386250
Following gene: 119386252
Centisome position: 39.81
GC content: 64.25
Gene sequence:
>1119_bases ATGAAAAGACTGCTTCTGGGCATCGGCCTGCTGCCCGTCCTGGCCGCTTCGGGCTCGGCCGAAACCTGGCAGGCGACCAA CTGGATGGCGCCTGCACATATCCTGAACGAGTTTCCCTATCAGCAATTCGCCAAGGATGTCGCCGAGGCGACGGACGGGG CGATGGAGTTCGAGATCTATTCCTCGGGCGCGCTGGTGCCCGCCCCCACGACGATGCAAGGCATCGCGGACGGCGTGGCG CAACTGGGCATCGTCTATCCGCCCTATACGCCGTCGGAACTGCCGCTGAACAACACGGTGAACGACCTGGCCTTTGTCGC CAAGGACGATCTTGCCGCGGCCTTCGCTTGGACGGAACTGGCCCTGACCAATGAAAAGATCCGCGCCGAATGGGCAAGGA ACGGCGGCATTTTCCTGGGCGGTTATTCGACGCCCTTCTACAATTTCATCTGCATGGGCGAGATCGTCTCGCCCAAGGAT GTCGCCGGCAAGAAGGTCCGGGTGGCGGGCACGGCGCAAACGGAATGGATCCAGTCCCTGGGCGGCGTGCCGGTTTCGGT TCCCATCGCCGATGTCTATTCCGGGCTCGAGCGCGGCTCGATCGACTGCACGCTTTCGGATGCCACCAACCTCGACAAGG GCAACAAGTTCTGGGAGGTCGCCAAGACCGTGAACGTGCTGCCGCAGGGCGTGGTCCTGGGCGCGACCTATGTCTTCAAC AAGGATTTCTGGGCCGGGCTGGAACCGGCGCAGCGGCGCGTCCTGCTGGACAACATCGCGCTTGGCCTGGCCCGGTCGCA GGTCGCCTATCACGTCGGCGTCGAGGCGGCGCTGGCCGGATCGGCAGAGCGTGGGCTGAAGATCGGCGAGCCCACGCAGG AATTGCAGGATACGCTGGCGGCCTTCCAGGCGCAGGTGGTCGAAAAGCTGCCGGCCAAGGCCGTGGCCGAACGGGGGATC GAGGACCCGACCGATGTGCTGGAGGAGTTCGTCGCGCTGGAGGAGAAGTGGCGCGCGCTTGTCGCCGACGTGGACCGCAC CGATGCCGACGCGGTCGCCGCGATCCTGAAGGCGAACCTGTACGACAAGATCGACGAAAACACCTTTGGCGTCGAATGA
Upstream 100 bases:
>100_bases TCTGGCTGCCGGGAATGATGACCACCACCCGCTGATTATCCTTCGCCGTGCCGCGGTGGAAATGCGGCACGGCCATGTCC AACCCTGGGGAGAGAGAACC
Downstream 100 bases:
>100_bases TGCCGGGCCCCCGGGCGCGTTAGCGGGCCGGGGGCGATACTTACCGTCAACTGCCGGACCGACTGGTGAATCATGACCTC TCAACCGCTTACCACCGCAA
Product: TRAP dicarboxylate transporter- DctP subunit
Products: NA
Alternate protein names: Trap Dicarboxylate Transporter- Dctp Subunit; TRAP Dicarboxylate Transporter-DctP Subunit
Number of amino acids: Translated: 372; Mature: 372
Protein sequence:
>372_residues MKRLLLGIGLLPVLAASGSAETWQATNWMAPAHILNEFPYQQFAKDVAEATDGAMEFEIYSSGALVPAPTTMQGIADGVA QLGIVYPPYTPSELPLNNTVNDLAFVAKDDLAAAFAWTELALTNEKIRAEWARNGGIFLGGYSTPFYNFICMGEIVSPKD VAGKKVRVAGTAQTEWIQSLGGVPVSVPIADVYSGLERGSIDCTLSDATNLDKGNKFWEVAKTVNVLPQGVVLGATYVFN KDFWAGLEPAQRRVLLDNIALGLARSQVAYHVGVEAALAGSAERGLKIGEPTQELQDTLAAFQAQVVEKLPAKAVAERGI EDPTDVLEEFVALEEKWRALVADVDRTDADAVAAILKANLYDKIDENTFGVE
Sequences:
>Translated_372_residues MKRLLLGIGLLPVLAASGSAETWQATNWMAPAHILNEFPYQQFAKDVAEATDGAMEFEIYSSGALVPAPTTMQGIADGVA QLGIVYPPYTPSELPLNNTVNDLAFVAKDDLAAAFAWTELALTNEKIRAEWARNGGIFLGGYSTPFYNFICMGEIVSPKD VAGKKVRVAGTAQTEWIQSLGGVPVSVPIADVYSGLERGSIDCTLSDATNLDKGNKFWEVAKTVNVLPQGVVLGATYVFN KDFWAGLEPAQRRVLLDNIALGLARSQVAYHVGVEAALAGSAERGLKIGEPTQELQDTLAAFQAQVVEKLPAKAVAERGI EDPTDVLEEFVALEEKWRALVADVDRTDADAVAAILKANLYDKIDENTFGVE >Mature_372_residues MKRLLLGIGLLPVLAASGSAETWQATNWMAPAHILNEFPYQQFAKDVAEATDGAMEFEIYSSGALVPAPTTMQGIADGVA QLGIVYPPYTPSELPLNNTVNDLAFVAKDDLAAAFAWTELALTNEKIRAEWARNGGIFLGGYSTPFYNFICMGEIVSPKD VAGKKVRVAGTAQTEWIQSLGGVPVSVPIADVYSGLERGSIDCTLSDATNLDKGNKFWEVAKTVNVLPQGVVLGATYVFN KDFWAGLEPAQRRVLLDNIALGLARSQVAYHVGVEAALAGSAERGLKIGEPTQELQDTLAAFQAQVVEKLPAKAVAERGI EDPTDVLEEFVALEEKWRALVADVDRTDADAVAAILKANLYDKIDENTFGVE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39964; Mature: 39964
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLLLGIGLLPVLAASGSAETWQATNWMAPAHILNEFPYQQFAKDVAEATDGAMEFEIY CCCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE SSGALVPAPTTMQGIADGVAQLGIVYPPYTPSELPLNNTVNDLAFVAKDDLAAAFAWTEL CCCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ALTNEKIRAEWARNGGIFLGGYSTPFYNFICMGEIVSPKDVAGKKVRVAGTAQTEWIQSL HHCCHHHHHHHHCCCCEEEECCCCCHHHEEEECCCCCCCCCCCCEEEEECCHHHHHHHHH GGVPVSVPIADVYSGLERGSIDCTLSDATNLDKGNKFWEVAKTVNVLPQGVVLGATYVFN CCCCEEEEHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEC KDFWAGLEPAQRRVLLDNIALGLARSQVAYHVGVEAALAGSAERGLKIGEPTQELQDTLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHCCCCCCCCHHHHHHHHH AFQAQVVEKLPAKAVAERGIEDPTDVLEEFVALEEKWRALVADVDRTDADAVAAILKANL HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH YDKIDENTFGVE HHHCCCCCCCCC >Mature Secondary Structure MKRLLLGIGLLPVLAASGSAETWQATNWMAPAHILNEFPYQQFAKDVAEATDGAMEFEIY CCCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEEEEE SSGALVPAPTTMQGIADGVAQLGIVYPPYTPSELPLNNTVNDLAFVAKDDLAAAFAWTEL CCCCCCCCCCHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ALTNEKIRAEWARNGGIFLGGYSTPFYNFICMGEIVSPKDVAGKKVRVAGTAQTEWIQSL HHCCHHHHHHHHCCCCEEEECCCCCHHHEEEECCCCCCCCCCCCEEEEECCHHHHHHHHH GGVPVSVPIADVYSGLERGSIDCTLSDATNLDKGNKFWEVAKTVNVLPQGVVLGATYVFN CCCCEEEEHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEC KDFWAGLEPAQRRVLLDNIALGLARSQVAYHVGVEAALAGSAERGLKIGEPTQELQDTLA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHCCCCCCCCHHHHHHHHH AFQAQVVEKLPAKAVAERGIEDPTDVLEEFVALEEKWRALVADVDRTDADAVAAILKANL HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH YDKIDENTFGVE HHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA