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The map label for this gene is cynR [C]

Identifier: 119386224

GI number: 119386224

Start: 657528

End: 658811

Strand: Direct

Name: cynR [C]

Synonym: Pden_3513

Alternate gene names: 119386224

Gene position: 657528-658811 (Clockwise)

Preceding gene: 119386221

Following gene: 119386225

Centisome position: 38.01

GC content: 65.26

Gene sequence:

>1284_bases
ATGCGACCACTGGAAGCCCCTGACGCGACGGACGTGGCTCGTGAGGTTCCGACGACGGAGAGCAGTGCCGCGACGCCTTG
CAGGGCGAACACACGTCAAGCATATGTCAGCTATCGAACACACGGGGAAACCTTGCGGACCTCCACGCTGATTCTGACGG
ATCTCGCCCTGCGTCACGGCGGCGTGCGCGCCGCTTCGCGGGCGGCGCGGGTGCCGGTCTCGACGATTTCGGCCGCTCTG
ACCCGGGTCGAGGATAGCCTGTCGCTGAAGCTCGTCCGGCGCAGCCAGACCGGACTTGTCCCCACTGTCCAAGCGGCCCG
GCTTGCACCGGCGATCAGCGAGATGGCGGATATCGCCCGTGCTATTCATCAGGTTGGGCCGGACGAGGTGCCGGAATGTC
CGGCCTCCCTGGCTGCGCTGTTCCGGCTGGCGGCTGTCACGCGACTTGGTTCCATCCGCCGCGCAGCCTCCGAAATGGGC
GTCGGTCAGCCGCAACTGACTCGCCAGATCGCGCAGGTCGAAAGCAACCATGGCCAGGTCCTGCTGCACCGGGGCAGCAA
GGGAATCTCCCTTACGCCCGAAGGTGAGCGGGTGGTGCGACTGATCGAACGGTTCGAGCTTGCCTGGCGGGCGTTCACGG
GTGAAGCGACGCCGGTCTATACGATGGCTTCGCGCAGATTCGCCCTGGGATCGATCATTCCCGCAACCGCACGTGGCAAT
CTTGCCCATCTGGTGGCGACGATCACCTCTCGCCTCTACATGCAGAAGGGCGTCACGATCACCGTCGCCTCGGCCATTGC
CGAAGATCTGCTGACCGGCCTTGATACCGGCCGCTTCGACGTGGTGCTTGTCGATACCGACCTGCACGACCCGGCCTATC
GGCAGCACGAGCTAGAGCGCACCCCCGTCGCCATCGTCGGTCGCGGCCTTCCGCGGCAGCGGCCGGAGCAAGAGGAACTG
ACGGAGATCCTGGCCCGCAAGCCCTTCGTGCTTCAGTCCCGGCGCAGCGGCCTGCGCCAGCGCGCCGAAAGCTTTCTGAA
CAGATACGCGACGCCCGACTGGCGCTCGCGCATTCCGGTTGTCGAGGTCGATTCCCTGCCGGTCATCGTCAACATGGTGG
CGGGCGGCGAGTATCGGTCGCTCTTGCCCCGCTCCGTTGGCAAAACGCTTTCCGAATGCGTCGCCCTTGATCTGCCGTCC
GAATTCGACCAGTTCCTGCAACTGACCTGGAAGCGGTCGCCGAAGGCCGAGCGCTTTGCGCAGGAAATACTTTCGGGCCT
CTGA

Upstream 100 bases:

>100_bases
TATAAATTGATTTGCAATACAAATTATATATGCGTGAGGGTGAAGGGGCGCGAGCCCGGATTGCCGCGGCGATCCTGATG
GGACGGCTTCCTTTCAGCCA

Downstream 100 bases:

>100_bases
TCCGGTCCCTTGCCCCTTTTGAGCAATGTTGCATGTGGTTCGGCGGGAGCGCGAGCCGGCGCATGTCCATGAAATCGCCA
TAAGGTGTCCTGATTTTGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Protein LysR Family

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MRPLEAPDATDVAREVPTTESSAATPCRANTRQAYVSYRTHGETLRTSTLILTDLALRHGGVRAASRAARVPVSTISAAL
TRVEDSLSLKLVRRSQTGLVPTVQAARLAPAISEMADIARAIHQVGPDEVPECPASLAALFRLAAVTRLGSIRRAASEMG
VGQPQLTRQIAQVESNHGQVLLHRGSKGISLTPEGERVVRLIERFELAWRAFTGEATPVYTMASRRFALGSIIPATARGN
LAHLVATITSRLYMQKGVTITVASAIAEDLLTGLDTGRFDVVLVDTDLHDPAYRQHELERTPVAIVGRGLPRQRPEQEEL
TEILARKPFVLQSRRSGLRQRAESFLNRYATPDWRSRIPVVEVDSLPVIVNMVAGGEYRSLLPRSVGKTLSECVALDLPS
EFDQFLQLTWKRSPKAERFAQEILSGL

Sequences:

>Translated_427_residues
MRPLEAPDATDVAREVPTTESSAATPCRANTRQAYVSYRTHGETLRTSTLILTDLALRHGGVRAASRAARVPVSTISAAL
TRVEDSLSLKLVRRSQTGLVPTVQAARLAPAISEMADIARAIHQVGPDEVPECPASLAALFRLAAVTRLGSIRRAASEMG
VGQPQLTRQIAQVESNHGQVLLHRGSKGISLTPEGERVVRLIERFELAWRAFTGEATPVYTMASRRFALGSIIPATARGN
LAHLVATITSRLYMQKGVTITVASAIAEDLLTGLDTGRFDVVLVDTDLHDPAYRQHELERTPVAIVGRGLPRQRPEQEEL
TEILARKPFVLQSRRSGLRQRAESFLNRYATPDWRSRIPVVEVDSLPVIVNMVAGGEYRSLLPRSVGKTLSECVALDLPS
EFDQFLQLTWKRSPKAERFAQEILSGL
>Mature_427_residues
MRPLEAPDATDVAREVPTTESSAATPCRANTRQAYVSYRTHGETLRTSTLILTDLALRHGGVRAASRAARVPVSTISAAL
TRVEDSLSLKLVRRSQTGLVPTVQAARLAPAISEMADIARAIHQVGPDEVPECPASLAALFRLAAVTRLGSIRRAASEMG
VGQPQLTRQIAQVESNHGQVLLHRGSKGISLTPEGERVVRLIERFELAWRAFTGEATPVYTMASRRFALGSIIPATARGN
LAHLVATITSRLYMQKGVTITVASAIAEDLLTGLDTGRFDVVLVDTDLHDPAYRQHELERTPVAIVGRGLPRQRPEQEEL
TEILARKPFVLQSRRSGLRQRAESFLNRYATPDWRSRIPVVEVDSLPVIVNMVAGGEYRSLLPRSVGKTLSECVALDLPS
EFDQFLQLTWKRSPKAERFAQEILSGL

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46767; Mature: 46767

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLEAPDATDVAREVPTTESSAATPCRANTRQAYVSYRTHGETLRTSTLILTDLALRHG
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHCC
GVRAASRAARVPVSTISAALTRVEDSLSLKLVRRSQTGLVPTVQAARLAPAISEMADIAR
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AIHQVGPDEVPECPASLAALFRLAAVTRLGSIRRAASEMGVGQPQLTRQIAQVESNHGQV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
LLHRGSKGISLTPEGERVVRLIERFELAWRAFTGEATPVYTMASRRFALGSIIPATARGN
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCH
LAHLVATITSRLYMQKGVTITVASAIAEDLLTGLDTGRFDVVLVDTDLHDPAYRQHELER
HHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCC
TPVAIVGRGLPRQRPEQEELTEILARKPFVLQSRRSGLRQRAESFLNRYATPDWRSRIPV
CCHHEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCE
VEVDSLPVIVNMVAGGEYRSLLPRSVGKTLSECVALDLPSEFDQFLQLTWKRSPKAERFA
EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
QEILSGL
HHHHHCC
>Mature Secondary Structure
MRPLEAPDATDVAREVPTTESSAATPCRANTRQAYVSYRTHGETLRTSTLILTDLALRHG
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHCC
GVRAASRAARVPVSTISAALTRVEDSLSLKLVRRSQTGLVPTVQAARLAPAISEMADIAR
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
AIHQVGPDEVPECPASLAALFRLAAVTRLGSIRRAASEMGVGQPQLTRQIAQVESNHGQV
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE
LLHRGSKGISLTPEGERVVRLIERFELAWRAFTGEATPVYTMASRRFALGSIIPATARGN
EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCH
LAHLVATITSRLYMQKGVTITVASAIAEDLLTGLDTGRFDVVLVDTDLHDPAYRQHELER
HHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCC
TPVAIVGRGLPRQRPEQEELTEILARKPFVLQSRRSGLRQRAESFLNRYATPDWRSRIPV
CCHHEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCE
VEVDSLPVIVNMVAGGEYRSLLPRSVGKTLSECVALDLPSEFDQFLQLTWKRSPKAERFA
EEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHH
QEILSGL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA