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The map label for this gene is ybbI [C]

Identifier: 119386189

GI number: 119386189

Start: 624840

End: 625202

Strand: Direct

Name: ybbI [C]

Synonym: Pden_3477

Alternate gene names: 119386189

Gene position: 624840-625202 (Clockwise)

Preceding gene: 119386186

Following gene: 119386191

Centisome position: 36.12

GC content: 65.01

Gene sequence:

>363_bases
ATGAAGATCGGCGACATCGCCAGGGCGGCGGGGGTGACGACCTCGCGCATCCGCTTCTATGAAAAGCGCGGGATCATCGC
CCCGGCCGTGCGTGGGCCGAACGGCTATCGCGACTATCCCGAGGAGCTGATCGCCATCCTGCGCTTCATCGAGCAGGCGC
AGGGCCTTGGCTTTTCGCTGAAGGAAATCGCCGGCGTTGACGTCGCCCAAGGCGATCATCCGATCTCTTGCGACGAGGCG
ATCCGCCTCTTGTCGGGCAAGCTCGATTCCGTGGCAGCCCTGATCGCCGAAGCCAAGGAGCGCCAGCGCCGGATCAAGGC
GCTGATCGCCGAATTGCAGGGCCGCAAGCAATCCGCGGCCTGA

Upstream 100 bases:

>100_bases
CAGCGGGGTCTGGGTGGTTGCGGTCATGCGACAAGATCCTTTGCATCGTGACGCAAGGCGATATAGGGTTTAAACCTAGG
TTCAAGGTCAAGAGGCGCCA

Downstream 100 bases:

>100_bases
TGCGCGGCAGGACGATCATCCCGCGCCGGCCGTGATGGCCGAAAGAACCGGCGCATCGCGGCTGCCGCCGGCTACGCACC
GGACAGACCGCCAAATCCAT

Product: MerR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 120

Protein sequence:

>120_residues
MKIGDIARAAGVTTSRIRFYEKRGIIAPAVRGPNGYRDYPEELIAILRFIEQAQGLGFSLKEIAGVDVAQGDHPISCDEA
IRLLSGKLDSVAALIAEAKERQRRIKALIAELQGRKQSAA

Sequences:

>Translated_120_residues
MKIGDIARAAGVTTSRIRFYEKRGIIAPAVRGPNGYRDYPEELIAILRFIEQAQGLGFSLKEIAGVDVAQGDHPISCDEA
IRLLSGKLDSVAALIAEAKERQRRIKALIAELQGRKQSAA
>Mature_120_residues
MKIGDIARAAGVTTSRIRFYEKRGIIAPAVRGPNGYRDYPEELIAILRFIEQAQGLGFSLKEIAGVDVAQGDHPISCDEA
IRLLSGKLDSVAALIAEAKERQRRIKALIAELQGRKQSAA

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=62, Percent_Identity=41.9354838709677, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1789687, Length=110, Percent_Identity=35.4545454545455, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 13059; Mature: 13059

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIGDIARAAGVTTSRIRFYEKRGIIAPAVRGPNGYRDYPEELIAILRFIEQAQGLGFSL
CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCH
KEIAGVDVAQGDHPISCDEAIRLLSGKLDSVAALIAEAKERQRRIKALIAELQGRKQSAA
HHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKIGDIARAAGVTTSRIRFYEKRGIIAPAVRGPNGYRDYPEELIAILRFIEQAQGLGFSL
CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCH
KEIAGVDVAQGDHPISCDEAIRLLSGKLDSVAALIAEAKERQRRIKALIAELQGRKQSAA
HHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]