Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
---|---|
Accession | NC_008639 |
Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is macB [H]
Identifier: 119357469
GI number: 119357469
Start: 1895776
End: 1897041
Strand: Direct
Name: macB [H]
Synonym: Cpha266_1668
Alternate gene names: 119357469
Gene position: 1895776-1897041 (Clockwise)
Preceding gene: 119357468
Following gene: 119357470
Centisome position: 60.49
GC content: 48.34
Gene sequence:
>1266_bases ATGAAACCAGCCCGGCAGCAGTTTCGAAATGAAACCATGGAGAGCCTGAACATTGCGGTGTTTCAGATCAAATCCAATAA ATTCCGGTCCTTTCTCACGGCTCTCGGCGTTATTATCGGCATTGTTGCCATCACCATGATGGGTACGGCAATAAACGGTA TTGACACCGGATTTGAAAAAAGCCTGGCCATGCTTGGCTACGATGTCGTCTACGTCCAGAAATCCTCATGGAGCACCATG GGCCAATGGTGGCGTTACAGAAACCGTCCTGACCTCAAAACCGACTATGCGACACAGATCAATCGTATTATTGCCGACAA TCCGGATTCCGAACTCGAGATAGCCGTTCCCCAGATGTCAACCTACCAGGCTTCGGCAAAATACAGGGAAAAAATTCTTG AATCGATCTTTTCCCTTGGCACAACCCATGACTACCTTCTGACGGCATCGGGAGATCTTGCTCAAGGCCGATTCTTTACT CCGCAGGAATCGGCCGGGGGAAACATGGTCTGTGTCATAGGCGATGACATCGCAACAGGACTGTTCCCCCAGGAAAACGC TCTGGGCAAAACGATTCAGATCAAAAACGGAAAGTTCAGAATTATCGGCATTTTTAAAAAACAGGGGAAATTTCTCGGGC TCTTCAGTTTTGACAATCAGGCCATCATGCCCCTTGCCGCCTTTGAAAAAGTATATGGACGAAATATGTTTGTAACCATC CGGGTCAAGATCAGGAATCAGACCCGCATTGCTGCAGCAGAAGAGGAGTTGCGCGGACTCATGAGAAGAATACGACGCCT TCCTGTCGGCAGGGAGGATGATTTTTCGATAAATGAACAAAAAGCCTTTAAAAGCCAGCTTGATCCAATCAAGAACGGCA TTGCTGCGGCAGGCATCTTCATTACAGGCATGTCGCTTTTTGTCGGCGCAATCGGGATCATGAACATAACGTTTGTCAGC GTCAAGGAACGCACGCGGGAAATTGGCTTGCGCAAAGCACTTGGAGCCAGAAGGCGCACCATTCTCATGCAGTTTCTCAT TGAATCGGTAATGATCTGTATGCTTGGAGGAGTGATCGGGTTGTTTACAGCACTAAGCATTACCTTTGCGCTTCGACTTA TTGTGCCTGATTTTCCCGTAAAGTTTTCACCTGATCTTGTCATGGCAAGTATCGCGGTATCCCTTATCACCGGCATTATC TCTGGTCTTGCTCCTGCCGTAACGGCATCACGGCTTGAGGCTGCAGATGCACTGCGTTATGAATGA
Upstream 100 bases:
>100_bases GCAACACGATTATCCTTATTACGCATGAAGAGGATATCGCCCGCTATACCCACCGCGTCATACGGCTGAGAGATGGAAAA ATTGAAAGCGACATACCGCA
Downstream 100 bases:
>100_bases AAAAGGCATGAGTTTACGTGACCTCCTTTCACAGGCGATCTACTCACTGGTCGCAAACAAGCTCCGCTCCCTGTTGACAA CAATGGGCGTTGCGGTTGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 421; Mature: 421
Protein sequence:
>421_residues MKPARQQFRNETMESLNIAVFQIKSNKFRSFLTALGVIIGIVAITMMGTAINGIDTGFEKSLAMLGYDVVYVQKSSWSTM GQWWRYRNRPDLKTDYATQINRIIADNPDSELEIAVPQMSTYQASAKYREKILESIFSLGTTHDYLLTASGDLAQGRFFT PQESAGGNMVCVIGDDIATGLFPQENALGKTIQIKNGKFRIIGIFKKQGKFLGLFSFDNQAIMPLAAFEKVYGRNMFVTI RVKIRNQTRIAAAEEELRGLMRRIRRLPVGREDDFSINEQKAFKSQLDPIKNGIAAAGIFITGMSLFVGAIGIMNITFVS VKERTREIGLRKALGARRRTILMQFLIESVMICMLGGVIGLFTALSITFALRLIVPDFPVKFSPDLVMASIAVSLITGII SGLAPAVTASRLEAADALRYE
Sequences:
>Translated_421_residues MKPARQQFRNETMESLNIAVFQIKSNKFRSFLTALGVIIGIVAITMMGTAINGIDTGFEKSLAMLGYDVVYVQKSSWSTM GQWWRYRNRPDLKTDYATQINRIIADNPDSELEIAVPQMSTYQASAKYREKILESIFSLGTTHDYLLTASGDLAQGRFFT PQESAGGNMVCVIGDDIATGLFPQENALGKTIQIKNGKFRIIGIFKKQGKFLGLFSFDNQAIMPLAAFEKVYGRNMFVTI RVKIRNQTRIAAAEEELRGLMRRIRRLPVGREDDFSINEQKAFKSQLDPIKNGIAAAGIFITGMSLFVGAIGIMNITFVS VKERTREIGLRKALGARRRTILMQFLIESVMICMLGGVIGLFTALSITFALRLIVPDFPVKFSPDLVMASIAVSLITGII SGLAPAVTASRLEAADALRYE >Mature_421_residues MKPARQQFRNETMESLNIAVFQIKSNKFRSFLTALGVIIGIVAITMMGTAINGIDTGFEKSLAMLGYDVVYVQKSSWSTM GQWWRYRNRPDLKTDYATQINRIIADNPDSELEIAVPQMSTYQASAKYREKILESIFSLGTTHDYLLTASGDLAQGRFFT PQESAGGNMVCVIGDDIATGLFPQENALGKTIQIKNGKFRIIGIFKKQGKFLGLFSFDNQAIMPLAAFEKVYGRNMFVTI RVKIRNQTRIAAAEEELRGLMRRIRRLPVGREDDFSINEQKAFKSQLDPIKNGIAAAGIFITGMSLFVGAIGIMNITFVS VKERTREIGLRKALGARRRTILMQFLIESVMICMLGGVIGLFTALSITFALRLIVPDFPVKFSPDLVMASIAVSLITGII SGLAPAVTASRLEAADALRYE
Specific function: Part of the ABC transporter complex MacAB involved in macrolide export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation [H]
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI1787105, Length=422, Percent_Identity=28.9099526066351, Blast_Score=152, Evalue=4e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017911 - InterPro: IPR003593 - InterPro: IPR003838 [H]
Pfam domain/function: PF00005 ABC_tran; PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 46678; Mature: 46678
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPARQQFRNETMESLNIAVFQIKSNKFRSFLTALGVIIGIVAITMMGTAINGIDTGFEK CCCHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SLAMLGYDVVYVQKSSWSTMGQWWRYRNRPDLKTDYATQINRIIADNPDSELEIAVPQMS HHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCH TYQASAKYREKILESIFSLGTTHDYLLTASGDLAQGRFFTPQESAGGNMVCVIGDDIATG HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHC LFPQENALGKTIQIKNGKFRIIGIFKKQGKFLGLFSFDNQAIMPLAAFEKVYGRNMFVTI CCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEE RVKIRNQTRIAAAEEELRGLMRRIRRLPVGREDDFSINEQKAFKSQLDPIKNGIAAAGIF EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ITGMSLFVGAIGIMNITFVSVKERTREIGLRKALGARRRTILMQFLIESVMICMLGGVIG HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTALSITFALRLIVPDFPVKFSPDLVMASIAVSLITGIISGLAPAVTASRLEAADALRY HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC E C >Mature Secondary Structure MKPARQQFRNETMESLNIAVFQIKSNKFRSFLTALGVIIGIVAITMMGTAINGIDTGFEK CCCHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SLAMLGYDVVYVQKSSWSTMGQWWRYRNRPDLKTDYATQINRIIADNPDSELEIAVPQMS HHHHHCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCH TYQASAKYREKILESIFSLGTTHDYLLTASGDLAQGRFFTPQESAGGNMVCVIGDDIATG HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHC LFPQENALGKTIQIKNGKFRIIGIFKKQGKFLGLFSFDNQAIMPLAAFEKVYGRNMFVTI CCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEE RVKIRNQTRIAAAEEELRGLMRRIRRLPVGREDDFSINEQKAFKSQLDPIKNGIAAAGIF EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ITGMSLFVGAIGIMNITFVSVKERTREIGLRKALGARRRTILMQFLIESVMICMLGGVIG HHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTALSITFALRLIVPDFPVKFSPDLVMASIAVSLITGIISGLAPAVTASRLEAADALRY HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC E C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA