Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
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Accession | NC_008639 |
Length | 3,133,902 |
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The map label for this gene is ydiI [C]
Identifier: 119357444
GI number: 119357444
Start: 1872604
End: 1873044
Strand: Direct
Name: ydiI [C]
Synonym: Cpha266_1643
Alternate gene names: 119357444
Gene position: 1872604-1873044 (Clockwise)
Preceding gene: 119357443
Following gene: 119357445
Centisome position: 59.75
GC content: 46.49
Gene sequence:
>441_bases ATGGCGGCATCTTCTGTGTTCTTTGAATCGGTAAGTGTTGAAGAAATCAACAGTACCCAAATTATTGAAGGCCAGATGGC CCACCATCTCGGCATTGAAATGGTTGATGTTTCGGCTGACTCCATGACAGCGAGAATGCCTGTTGATCACCGTACCATAC AACGAATAGGCATTCTGCATGGCGGCGCATCACTCGCTCTTGCTGAAACTGTCGGCAGCATCGCAGCATCATTCTGCGTT AACCGCGAATTATTCTTCATTGTGGGACAAGAGATCAATGCAAACCATATCCGACCAGTCAACGAGGGATTTGTCTACGC AACAGCAACGCCCCTGCATCTTGGCAAAAACTCGCAGGTATGGGATATCAAAATAAAAAATGAAGCGGGAAAACTGGTTT GTGTCAGCAGGTTTACCGTAGCAGTCCTGAAAAAACAGTAA
Upstream 100 bases:
>100_bases AGTGTTTGCTTCCCAAGCAAAATGTCGCGAGTTCGAATCTCGTCACCCGCTCCCTTTTATAGACCTCCCTTGGCGCGCAT CACCTAATATCCGACGATAT
Downstream 100 bases:
>100_bases GTTTCGCAACAAGTTTCACCACCGGGCTGTTTTTCTCAAACAGCCGGTCAATTTTTCTCAAAACTTTTTATACCTTGTTC CTTTCACAGAAGAGGTTATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MAASSVFFESVSVEEINSTQIIEGQMAHHLGIEMVDVSADSMTARMPVDHRTIQRIGILHGGASLALAETVGSIAASFCV NRELFFIVGQEINANHIRPVNEGFVYATATPLHLGKNSQVWDIKIKNEAGKLVCVSRFTVAVLKKQ
Sequences:
>Translated_146_residues MAASSVFFESVSVEEINSTQIIEGQMAHHLGIEMVDVSADSMTARMPVDHRTIQRIGILHGGASLALAETVGSIAASFCV NRELFFIVGQEINANHIRPVNEGFVYATATPLHLGKNSQVWDIKIKNEAGKLVCVSRFTVAVLKKQ >Mature_145_residues AASSVFFESVSVEEINSTQIIEGQMAHHLGIEMVDVSADSMTARMPVDHRTIQRIGILHGGASLALAETVGSIAASFCVN RELFFIVGQEINANHIRPVNEGFVYATATPLHLGKNSQVWDIKIKNEAGKLVCVSRFTVAVLKKQ
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thioesterase PaaI family [H]
Homologues:
Organism=Escherichia coli, GI1787976, Length=138, Percent_Identity=44.9275362318841, Blast_Score=122, Evalue=1e-29, Organism=Escherichia coli, GI1786813, Length=138, Percent_Identity=44.2028985507246, Blast_Score=119, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003736 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: NA
Molecular weight: Translated: 15864; Mature: 15733
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAASSVFFESVSVEEINSTQIIEGQMAHHLGIEMVDVSADSMTARMPVDHRTIQRIGILH CCCCHHEEEECCCCCCCCEEEECCCHHHHCCEEEEEECCCCEEEECCCCHHHHHHEEEEE GGASLALAETVGSIAASFCVNRELFFIVGQEINANHIRPVNEGFVYATATPLHLGKNSQV CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCE WDIKIKNEAGKLVCVSRFTVAVLKKQ EEEEECCCCCCEEEEEEEEEEEEECC >Mature Secondary Structure AASSVFFESVSVEEINSTQIIEGQMAHHLGIEMVDVSADSMTARMPVDHRTIQRIGILH CCCHHEEEECCCCCCCCEEEECCCHHHHCCEEEEEECCCCEEEECCCCHHHHHHEEEEE GGASLALAETVGSIAASFCVNRELFFIVGQEINANHIRPVNEGFVYATATPLHLGKNSQV CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEEECEEEECCCCCE WDIKIKNEAGKLVCVSRFTVAVLKKQ EEEEECCCCCCEEEEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]