Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
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Accession | NC_008639 |
Length | 3,133,902 |
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The map label for this gene is hisJ [H]
Identifier: 119356995
GI number: 119356995
Start: 1330034
End: 1330831
Strand: Direct
Name: hisJ [H]
Synonym: Cpha266_1178
Alternate gene names: 119356995
Gene position: 1330034-1330831 (Clockwise)
Preceding gene: 119356990
Following gene: 119356996
Centisome position: 42.44
GC content: 42.11
Gene sequence:
>798_bases ATGAAAATCATCATTATGAAAATCAATCGCTTAAGCATAGTAATTATGGCGTTTTTTTGCTCCAGCCTCCTCTTGTCAGG TTGTAGCAAAAGAGAAAAAATCAGTGCGCTTCAGCAATTGAACGGTAAAGAGTTTGCGATCCCTACAGGTACCGTTGCTG ATCAGCTTGTGCTTTCAAAGCTGCCAAATGCGAAATTCAAGTATTTTAACAGTGTTATGGATGCTGCGCTTGCCGTTAAA TCAGGAAAGGCAGATGCTGCCGCTTATGATGAGCCTATTCTCAAAAACATTGCTGCTAAAAACAGTGGCCTTGTTGTGCT TTCAGACATGATTACGGTTGATAACTATGGGTTTGCTGTACGTAAAGATGATACTGAGTTAAAAAAAAACATAGATACTG TCGTGTTGGACCTTAAGAATAACGGCACTACTGGTCAAATGATGAAGCGCTGGTTCCCGGTATCGGGGAATCCTGCTCCT ATGCCGGTGATTTCATCAACCGGAAGCAAAGGTATCTTGAGATTGGGCACTGCAAGCGTAACTGAGCCATTTTCTTTTGT GGATGGTTCGGGTGAAATTGTAGGATATGATATTGAACTTGCCAGATATATTGCCAAAAAACTTGACAAGAAGCTTGTTA TTGTGAATATGGATTTTGGAGGGATGATTCCTGCCCTGATGTCAAGCAAGGTTGATATGATTGCGGCTTGTATTACCATA ACAGACGAACGCTCCAGGCAGGTTCTTTTTTCTGAGCCGTATTATATCGGAGGGATTGCTGCGCTTGTAAGGCAGTGA
Upstream 100 bases:
>100_bases TTCTTACTAATTCCACAGGGAGATTTCCATTCAATACCGTATTATTCACCTTGTTTCTAATTGTTTTTTTCTCGGTTCAT GAGATTTTTGGCGTAAAAAA
Downstream 100 bases:
>100_bases CTGGTTTCGATAAGAAAAATTTCTGTACATCAGTAATCTCTTATGAGTTTGGAATGGAACGGTCATAAACAGTGATGACA TCTTTGCTGCCAGCGGAATA
Product: amino acid ABC transporter periplasmic protein
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: HBP; p29 [H]
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MKIIIMKINRLSIVIMAFFCSSLLLSGCSKREKISALQQLNGKEFAIPTGTVADQLVLSKLPNAKFKYFNSVMDAALAVK SGKADAAAYDEPILKNIAAKNSGLVVLSDMITVDNYGFAVRKDDTELKKNIDTVVLDLKNNGTTGQMMKRWFPVSGNPAP MPVISSTGSKGILRLGTASVTEPFSFVDGSGEIVGYDIELARYIAKKLDKKLVIVNMDFGGMIPALMSSKVDMIAACITI TDERSRQVLFSEPYYIGGIAALVRQ
Sequences:
>Translated_265_residues MKIIIMKINRLSIVIMAFFCSSLLLSGCSKREKISALQQLNGKEFAIPTGTVADQLVLSKLPNAKFKYFNSVMDAALAVK SGKADAAAYDEPILKNIAAKNSGLVVLSDMITVDNYGFAVRKDDTELKKNIDTVVLDLKNNGTTGQMMKRWFPVSGNPAP MPVISSTGSKGILRLGTASVTEPFSFVDGSGEIVGYDIELARYIAKKLDKKLVIVNMDFGGMIPALMSSKVDMIAACITI TDERSRQVLFSEPYYIGGIAALVRQ >Mature_265_residues MKIIIMKINRLSIVIMAFFCSSLLLSGCSKREKISALQQLNGKEFAIPTGTVADQLVLSKLPNAKFKYFNSVMDAALAVK SGKADAAAYDEPILKNIAAKNSGLVVLSDMITVDNYGFAVRKDDTELKKNIDTVVLDLKNNGTTGQMMKRWFPVSGNPAP MPVISSTGSKGILRLGTASVTEPFSFVDGSGEIVGYDIELARYIAKKLDKKLVIVNMDFGGMIPALMSSKVDMIAACITI TDERSRQVLFSEPYYIGGIAALVRQ
Specific function: Component of the high-affinity histidine permease, a binding-protein-dependent transport system. The other components are proteins hisQ, hisM, and hisP [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787088, Length=92, Percent_Identity=36.9565217391304, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787031, Length=101, Percent_Identity=39.6039603960396, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788228, Length=107, Percent_Identity=32.7102803738318, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1788649, Length=83, Percent_Identity=37.3493975903614, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1787085, Length=83, Percent_Identity=36.144578313253, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788648, Length=83, Percent_Identity=31.3253012048193, Blast_Score=64, Evalue=9e-12,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 28748; Mature: 28748
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIIIMKINRLSIVIMAFFCSSLLLSGCSKREKISALQQLNGKEFAIPTGTVADQLVLSK CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHH LPNAKFKYFNSVMDAALAVKSGKADAAAYDEPILKNIAAKNSGLVVLSDMITVDNYGFAV CCCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHCCCCCEEEEEEEEEECCCCEEE RKDDTELKKNIDTVVLDLKNNGTTGQMMKRWFPVSGNPAPMPVISSTGSKGILRLGTASV ECCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEECCCCC TEPFSFVDGSGEIVGYDIELARYIAKKLDKKLVIVNMDFGGMIPALMSSKVDMIAACITI CCCCCEECCCCCEEEEHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCHHHHEEEEEE TDERSRQVLFSEPYYIGGIAALVRQ ECCCCCEEEECCCCHHHHHHHHHCC >Mature Secondary Structure MKIIIMKINRLSIVIMAFFCSSLLLSGCSKREKISALQQLNGKEFAIPTGTVADQLVLSK CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHH LPNAKFKYFNSVMDAALAVKSGKADAAAYDEPILKNIAAKNSGLVVLSDMITVDNYGFAV CCCHHHHHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHCCCCCEEEEEEEEEECCCCEEE RKDDTELKKNIDTVVLDLKNNGTTGQMMKRWFPVSGNPAPMPVISSTGSKGILRLGTASV ECCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEECCCCC TEPFSFVDGSGEIVGYDIELARYIAKKLDKKLVIVNMDFGGMIPALMSSKVDMIAACITI CCCCCEECCCCCEEEEHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCHHHHEEEEEE TDERSRQVLFSEPYYIGGIAALVRQ ECCCCCEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9192026; 9395059; 10688204 [H]