Definition | Chlorobium phaeobacteroides DSM 266 chromosome, complete genome. |
---|---|
Accession | NC_008639 |
Length | 3,133,902 |
Click here to switch to the map view.
The map label for this gene is 119356832
Identifier: 119356832
GI number: 119356832
Start: 1142892
End: 1143899
Strand: Direct
Name: 119356832
Synonym: Cpha266_1005
Alternate gene names: NA
Gene position: 1142892-1143899 (Clockwise)
Preceding gene: 119356831
Following gene: 119356835
Centisome position: 36.47
GC content: 50.4
Gene sequence:
>1008_bases ATGATCGACAAGCTTTTACATACTGTCCAGCAATGGTGGCGGCTTTTACTGATGGCAGCAATTGTTCCCGCAGCCATTTT TTTTATTCTGAAACCCTGGAACATCCCGAAGCTGTTATCGAGATCGCGTCCGGCAGAAAATCATGACGAGGCTCTTCGTC GTGCCGAAGCCCTTAAAAGTGCGCAGACAAAAGAGATGAATCCTCTCTGTCTCCTGCAGGTAATGACACACCGGAAGAAA ACAGATCGAGCTGTCATTCTTGTTCATGGTTATACGAGCTGTCCCAGGCAGTTTTATGAACTTGGTCGGCGCTTTTATGA TCTCGGTGATAATGTGCTGATTGCGCCTCTTCCGCATCACGGACTGGCTGACCGACTGACGGATGATCAGGGTCAGCTTA AGGCAGAAGAGCTTGCCGCTTATGCCGATGAGGTTGTTGACATTGCCTGCGGTCTTGGAGATCGGGTTGTGATGATGGGT ATATCCGCAGGAGGGGTAACCACTGCCTGGGCAGCACAGAACCGGCGCGATATTGATCTTGCCGTCATCGTCTCTCCCGC ATTCGGATTCGGGCAGATTCCTGTTCCACTTACTGCGGCAGCGATGAACATCTATGCAATGCTTCCCGATTCCTATTCCT GGTGGAATGCAGAGCTTCAGGAAAATCTCCATCCTGACTATACCTATCCCCGTTATTCCATGCATGCGCTTACGGAGATT CTTCGGCTCGGGTTTGTCGTTCAGGAAGAGGCCATGCATGCCTCTCCGGCAGCAGAAAAGATCGTGATGGTGTTCAATGC CAACGATACATCCATCAATAATGATCGAACCCGGGAAATTCTTGATATCTGGAATACCGGCCACATTACTATCGAAACCT TCGAGTTTCAGGCATCGCTCAAGCTTGGTCATGACCTTATCGATCCGAACCAGCCCGACCAGAATATTGCTCTGGTCTAT CCTGAGATGATTCGGTTATGCGAGTTGCCCCGCCAGGGGGAACCTTGA
Upstream 100 bases:
>100_bases GTGGCGATATCTCGATTGTTCCATTTGTCAGATATGGTTATTTTGAGTTATGAAACTCATCTGAACAGATAACTGATGAC GGTTAATCGGGGAGAGTGTG
Downstream 100 bases:
>100_bases CCGGCTTAAGGGTTCATCAATATCAGAGTGACCAGAGAGTTAACTGTTCGGAAAACGAAAAAGCGTAAAGAGTCTCGATG TTGTCGAGACTCTTTGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 335; Mature: 335
Protein sequence:
>335_residues MIDKLLHTVQQWWRLLLMAAIVPAAIFFILKPWNIPKLLSRSRPAENHDEALRRAEALKSAQTKEMNPLCLLQVMTHRKK TDRAVILVHGYTSCPRQFYELGRRFYDLGDNVLIAPLPHHGLADRLTDDQGQLKAEELAAYADEVVDIACGLGDRVVMMG ISAGGVTTAWAAQNRRDIDLAVIVSPAFGFGQIPVPLTAAAMNIYAMLPDSYSWWNAELQENLHPDYTYPRYSMHALTEI LRLGFVVQEEAMHASPAAEKIVMVFNANDTSINNDRTREILDIWNTGHITIETFEFQASLKLGHDLIDPNQPDQNIALVY PEMIRLCELPRQGEP
Sequences:
>Translated_335_residues MIDKLLHTVQQWWRLLLMAAIVPAAIFFILKPWNIPKLLSRSRPAENHDEALRRAEALKSAQTKEMNPLCLLQVMTHRKK TDRAVILVHGYTSCPRQFYELGRRFYDLGDNVLIAPLPHHGLADRLTDDQGQLKAEELAAYADEVVDIACGLGDRVVMMG ISAGGVTTAWAAQNRRDIDLAVIVSPAFGFGQIPVPLTAAAMNIYAMLPDSYSWWNAELQENLHPDYTYPRYSMHALTEI LRLGFVVQEEAMHASPAAEKIVMVFNANDTSINNDRTREILDIWNTGHITIETFEFQASLKLGHDLIDPNQPDQNIALVY PEMIRLCELPRQGEP >Mature_335_residues MIDKLLHTVQQWWRLLLMAAIVPAAIFFILKPWNIPKLLSRSRPAENHDEALRRAEALKSAQTKEMNPLCLLQVMTHRKK TDRAVILVHGYTSCPRQFYELGRRFYDLGDNVLIAPLPHHGLADRLTDDQGQLKAEELAAYADEVVDIACGLGDRVVMMG ISAGGVTTAWAAQNRRDIDLAVIVSPAFGFGQIPVPLTAAAMNIYAMLPDSYSWWNAELQENLHPDYTYPRYSMHALTEI LRLGFVVQEEAMHASPAAEKIVMVFNANDTSINNDRTREILDIWNTGHITIETFEFQASLKLGHDLIDPNQPDQNIALVY PEMIRLCELPRQGEP
Specific function: Unknown
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37822; Mature: 37822
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDKLLHTVQQWWRLLLMAAIVPAAIFFILKPWNIPKLLSRSRPAENHDEALRRAEALKS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH AQTKEMNPLCLLQVMTHRKKTDRAVILVHGYTSCPRQFYELGRRFYDLGDNVLIAPLPHH HHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC GLADRLTDDQGQLKAEELAAYADEVVDIACGLGDRVVMMGISAGGVTTAWAAQNRRDIDL CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHHCCCCCCCEE AVIVSPAFGFGQIPVPLTAAAMNIYAMLPDSYSWWNAELQENLHPDYTYPRYSMHALTEI EEEEECCCCCCCCCCHHHHHHHEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH LRLGFVVQEEAMHASPAAEKIVMVFNANDTSINNDRTREILDIWNTGHITIETFEFQASL HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEH KLGHDLIDPNQPDQNIALVYPEMIRLCELPRQGEP HHCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCC >Mature Secondary Structure MIDKLLHTVQQWWRLLLMAAIVPAAIFFILKPWNIPKLLSRSRPAENHDEALRRAEALKS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH AQTKEMNPLCLLQVMTHRKKTDRAVILVHGYTSCPRQFYELGRRFYDLGDNVLIAPLPHH HHHCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCC GLADRLTDDQGQLKAEELAAYADEVVDIACGLGDRVVMMGISAGGVTTAWAAQNRRDIDL CCHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEHHHCCCCCCCEE AVIVSPAFGFGQIPVPLTAAAMNIYAMLPDSYSWWNAELQENLHPDYTYPRYSMHALTEI EEEEECCCCCCCCCCHHHHHHHEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHH LRLGFVVQEEAMHASPAAEKIVMVFNANDTSINNDRTREILDIWNTGHITIETFEFQASL HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEEEH KLGHDLIDPNQPDQNIALVYPEMIRLCELPRQGEP HHCCCCCCCCCCCCCEEEECHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA