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The map label for this gene is ybaK [C]

Identifier: 118581057

GI number: 118581057

Start: 2873546

End: 2874028

Strand: Direct

Name: ybaK [C]

Synonym: Ppro_2645

Alternate gene names: 118581057

Gene position: 2873546-2874028 (Clockwise)

Preceding gene: 118581053

Following gene: 118581058

Centisome position: 71.7

GC content: 59.63

Gene sequence:

>483_bases
GTGGCAAAGAGCAAAACACCCACAACCCAGGCAGTGCGGCACCTGCGCCAGGAGCATGTGGTTTTTACGGACCACCTCTA
CAGCTATGTTGACAAGGGAGGCACCACCGTTTCGGCACGAGAACTGGGGGTGGACGAACATATCGTCATCAAGACCCTGG
TGATGGAGGATGACCGGCAGATCCCCCTGATAATCCTGATGCACGGCGACCGGCAGGTTTCCACCAGGGAATTGGCGCGG
ATCGTAGGCGTCAAACAGATCACCCCCTGCACACCGGAGACCGCCCACAGACATACCGGATACCTGGTAGGCGGCACCTC
CCCCTTCGGTACGCGCCGCAAGATGCCGGTCTACATGGAAGAGAGCATCGCCGCACTGCCGGAGATCATCATCAATGGTG
GCAAGCGGGGGTATCTGGTGCGCATGCAACCCGCGGAACTGATCCGCGTGCTTCAGCCAACGCTGGTGAGGGTCGGGATA
TAA

Upstream 100 bases:

>100_bases
GCGTGACAAGGGAACAAAAGCGTGCTATCTTGCAGACCATGGCGGGCCGGAAGCGCACCAAAAGAGCAACGCACACGAAA
CAAACAATCAGGACAATGCA

Downstream 100 bases:

>100_bases
AGGAGGGCACAATGCTTCGTAAGGCACAGATCAGCGACGTCAAAAACATCCAGAAACTGGTGATGGCCTACGCCACCAAG
GGGGACATGCTTTCCCGCTC

Product: YbaK/prolyl-tRNA synthetase associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAKSKTPTTQAVRHLRQEHVVFTDHLYSYVDKGGTTVSARELGVDEHIVIKTLVMEDDRQIPLIILMHGDRQVSTRELAR
IVGVKQITPCTPETAHRHTGYLVGGTSPFGTRRKMPVYMEESIAALPEIIINGGKRGYLVRMQPAELIRVLQPTLVRVGI

Sequences:

>Translated_160_residues
MAKSKTPTTQAVRHLRQEHVVFTDHLYSYVDKGGTTVSARELGVDEHIVIKTLVMEDDRQIPLIILMHGDRQVSTRELAR
IVGVKQITPCTPETAHRHTGYLVGGTSPFGTRRKMPVYMEESIAALPEIIINGGKRGYLVRMQPAELIRVLQPTLVRVGI
>Mature_159_residues
AKSKTPTTQAVRHLRQEHVVFTDHLYSYVDKGGTTVSARELGVDEHIVIKTLVMEDDRQIPLIILMHGDRQVSTRELARI
VGVKQITPCTPETAHRHTGYLVGGTSPFGTRRKMPVYMEESIAALPEIIINGGKRGYLVRMQPAELIRVLQPTLVRVGI

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17906; Mature: 17775

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSKTPTTQAVRHLRQEHVVFTDHLYSYVDKGGTTVSARELGVDEHIVIKTLVMEDDRQ
CCCCCCCHHHHHHHHHHHCEEHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEEEEECCCCC
IPLIILMHGDRQVSTRELARIVGVKQITPCTPETAHRHTGYLVGGTSPFGTRRKMPVYME
CCEEEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHH
ESIAALPEIIINGGKRGYLVRMQPAELIRVLQPTLVRVGI
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
AKSKTPTTQAVRHLRQEHVVFTDHLYSYVDKGGTTVSARELGVDEHIVIKTLVMEDDRQ
CCCCCCHHHHHHHHHHHCEEHHHHHHHHHHCCCCEEEHHHCCCCCCEEEEEEEECCCCC
IPLIILMHGDRQVSTRELARIVGVKQITPCTPETAHRHTGYLVGGTSPFGTRRKMPVYME
CCEEEEEECCCCCCHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHH
ESIAALPEIIINGGKRGYLVRMQPAELIRVLQPTLVRVGI
HHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]