Click here to switch to the map view.

The map label for this gene is ymbA [C]

Identifier: 118578846

GI number: 118578846

Start: 415930

End: 416541

Strand: Direct

Name: ymbA [C]

Synonym: Ppro_0404

Alternate gene names: 118578846

Gene position: 415930-416541 (Clockwise)

Preceding gene: 118578845

Following gene: 118578847

Centisome position: 10.38

GC content: 62.25

Gene sequence:

>612_bases
ATGAACAACGGATTCAACCTGCCGAGAACGCTCATTCTGGTCATTGCAACCATCTGGCTTGCCGGTTGCGCACGTTCGCC
ACAGGCCCGCTTCTATACGTTGAGCCCCCTTGGCCCCCAGGCAGCGAAACCGCCGGCATCGGCGGTAAGGCAGGTCTCCC
TCAGTATCGCTCCGGTTGAGGTCCCCGACTACCTGAACCGTCCCCAGATCGTGACCAGGAGCGGACAGAACGAACTGAAA
CTGGCCGAATTCGACCGCTGGGCCGGTTCCCTTCCCGACAATATCGCCGCAGTGATGGCGGAGAACCTCTCCCTGCTCCT
TGCCAGCGACCGGGTGCAGGCCGCACCCCGGGGACGGAACGAAAAAGCCGACTATACCCTGGCCATGCGAATCCTCCGTC
TGGACTGCGTGCCGGGGGACCAGCTGAGCATGAGGGTTCAGTGGACCCTTTCCGCCGCGGATGGAACCTGCGTCGCGGCG
CGTGTGTCGACCTGTATGGAGAAGCTGAAAGATTCCCGCTACGATACGTTGGTGGCGGCCGTTAGCAGCGCTCTCGGGCA
GGTGAGCAGGGAGATCGCCCGGGAGATCCATGATCCCATGAAGGCTGAGTGA

Upstream 100 bases:

>100_bases
CTGTCGCGCGCCGCCCAGTCGCTGCGGATGCTTACCGATCAGCTGGAGCGTCATCCCGAGTCGCTGATCAGCGGCAAGCC
CGCCGCCAAAGGAGAGTGAG

Downstream 100 bases:

>100_bases
GCAGTTTCGCCCATTGCTCATCCCCCAGCTGACACCGGCGGAAGCGGCAGGCCGGTCGCTCCCGCCACATTACGACGAGT
GGAGAATACCATCAATGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Resolvase RNAse H-Like Fold

Number of amino acids: Translated: 203; Mature: 203

Protein sequence:

>203_residues
MNNGFNLPRTLILVIATIWLAGCARSPQARFYTLSPLGPQAAKPPASAVRQVSLSIAPVEVPDYLNRPQIVTRSGQNELK
LAEFDRWAGSLPDNIAAVMAENLSLLLASDRVQAAPRGRNEKADYTLAMRILRLDCVPGDQLSMRVQWTLSAADGTCVAA
RVSTCMEKLKDSRYDTLVAAVSSALGQVSREIAREIHDPMKAE

Sequences:

>Translated_203_residues
MNNGFNLPRTLILVIATIWLAGCARSPQARFYTLSPLGPQAAKPPASAVRQVSLSIAPVEVPDYLNRPQIVTRSGQNELK
LAEFDRWAGSLPDNIAAVMAENLSLLLASDRVQAAPRGRNEKADYTLAMRILRLDCVPGDQLSMRVQWTLSAADGTCVAA
RVSTCMEKLKDSRYDTLVAAVSSALGQVSREIAREIHDPMKAE
>Mature_203_residues
MNNGFNLPRTLILVIATIWLAGCARSPQARFYTLSPLGPQAAKPPASAVRQVSLSIAPVEVPDYLNRPQIVTRSGQNELK
LAEFDRWAGSLPDNIAAVMAENLSLLLASDRVQAAPRGRNEKADYTLAMRILRLDCVPGDQLSMRVQWTLSAADGTCVAA
RVSTCMEKLKDSRYDTLVAAVSSALGQVSREIAREIHDPMKAE

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22104; Mature: 22104

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGFNLPRTLILVIATIWLAGCARSPQARFYTLSPLGPQAAKPPASAVRQVSLSIAPVE
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHEECCEE
VPDYLNRPQIVTRSGQNELKLAEFDRWAGSLPDNIAAVMAENLSLLLASDRVQAAPRGRN
CHHHCCCCCEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHEEECCHHHCCCCCCC
EKADYTLAMRILRLDCVPGDQLSMRVQWTLSAADGTCVAARVSTCMEKLKDSRYDTLVAA
CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH
VSSALGQVSREIAREIHDPMKAE
HHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNNGFNLPRTLILVIATIWLAGCARSPQARFYTLSPLGPQAAKPPASAVRQVSLSIAPVE
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHEECCEE
VPDYLNRPQIVTRSGQNELKLAEFDRWAGSLPDNIAAVMAENLSLLLASDRVQAAPRGRN
CHHHCCCCCEEECCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHEEECCHHHCCCCCCC
EKADYTLAMRILRLDCVPGDQLSMRVQWTLSAADGTCVAARVSTCMEKLKDSRYDTLVAA
CCHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHH
VSSALGQVSREIAREIHDPMKAE
HHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA