| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is xseA [H]
Identifier: 118578622
GI number: 118578622
Start: 181105
End: 182685
Strand: Direct
Name: xseA [H]
Synonym: Ppro_0178
Alternate gene names: 118578622
Gene position: 181105-182685 (Clockwise)
Preceding gene: 118578621
Following gene: 118578623
Centisome position: 4.52
GC content: 55.66
Gene sequence:
>1581_bases ATGGAGAAACGTTTCTTCCCCCTCTCCGCTATCACAAAGCGGATCAATGAACTGCTGGAACCTGCCATCAGCAAGCAGTT CTGGGTCAAGGCCGAGATATCCACTGGCCGGGAACGAGGAGGAGCTTTTTACTGTGATCTGGTTGAAACGAATGCCGGCG GGAAAATCGTCGCAAAGATAGCCTGCACCATATGGCAAAGCGAGCTTGCCACCATCAGGAGGGCATTCAAGGCCAAGAAC ATGGATCTTGTACTCTCCAACGGGACTGTGGTCGGCTTCCTCTGTTCCCTCCAGTTCAGCCCACAGTACGGCCTGTCACT TCGGGTCATCGATGCTGACCCGTCCATCGCCCTGGGTGAGATGGAGTTAAAAAAACGGGACATCATCGAACGTCTCCAGA AGGAGGGGATGTTCGAGACGAACAAGGAACTCTCCGTGCCGCTCCTGCCACTGCGTCTCGGCCTGATCACCAGTGCCGGC AGTGCGGCGTACAATGACTTCATCCAGACCCTCACGGCATCGGGTTACGGCTTCAAGGTCTTCGTGGCCGACGCCATGAT GCAAGGAGATCAGACGGAGAAGTCGGTCATGCGGGCACTGGACGCCCTCGCCAGACTCGAAGTTGATCTCGTCTCCATCG TCCGGGGCGGAGGAAGCAAAACCGACCTCTACTTCCTTGACAACGAAGCCATCGCCCGCAGGATCGCCGGATTTGGCAAG CCGGTCTGGACTGGCATCGGGCATGAGATCGACACCAGCGTCCTCGACTATGTCGCCAACCGCTCTTTCAAAACCCCTAC CGCTGCGGCAGAGGAATTGGTGGCCCGCTTCATACAAATGCGCCGCCAACTGGACGAAGCAACGAACACCTTGCAAACCG TGTGGACCTACCGACTAAAACTCGACCGTGATTATCTGACGAGGGCGATGACCGGCATCCGGCAGGGGTCGAGGAAGCTC CTGGATGTCACCGCATCATTTCTGCGGGAGCAGGCCAAGGAATTACGACTGAAGGTTCAAGAGCGGCTTTCGACCGAGCA GGTCGTTATTGGGAGGCGCACGGAGAGATTGCGCTCTCTACCTATGGCCATGATCCAAAACCTTGCGGAGCGACTGGCAG CAAAACGACAGGAACTCAGATCACGGACATATTCCCGGATTTCCCGGTCAGGAGACACCCTGTCCGTGTTGAAGCAACGC TTTGTGAAGGAACGCTTTCTGCGCCGACTGCTCGTTGAGCGGGACAGCATCATGAAAGTCCGGCAGCAACTGAAGACCCG GTTCCTCTCCACATTCAGGATTAAGTCGATGACACTCGCTAACCTGAAGGGTCGACTCAAGGAAGAGAGAATTCTCCTGC GGTTCGGGACGGCCCGCAACAGCCTGAACGACAAGATGGCAATCCTGAAAGCCATTGATCCGCAGACTGTCCTGCAACGC GGTTTTGCCCTAGTGTATGGTCGAAACGGCGCGCTGATCAGGTCAATCAACGATGTCACAGAGAAAGAAATAATGACTAC CCGCTTGACTGATGGTTCGCTCATCAGCGAGGTTATCGCAAAGGAGAAACATCATGAGTGA
Upstream 100 bases:
>100_bases TTGATCAAGTCCAGAAGCAACTGCGCACCGGACAGGCGAAAATAGTCTTCGACCTGGTATCCAAGACCTGTAACATCATT CCGAGCAGGTGACCGCATCA
Downstream 100 bases:
>100_bases CACAACAGAGCTTACTTATGAGCAGAAAGTTGAAAAACTGGACGAGATCCTGACTAGGCTCGACAACTCAGAGACCCCCA TCGACAAACTTGCTGAAGAC
Product: exodeoxyribonuclease VII
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 526; Mature: 526
Protein sequence:
>526_residues MEKRFFPLSAITKRINELLEPAISKQFWVKAEISTGRERGGAFYCDLVETNAGGKIVAKIACTIWQSELATIRRAFKAKN MDLVLSNGTVVGFLCSLQFSPQYGLSLRVIDADPSIALGEMELKKRDIIERLQKEGMFETNKELSVPLLPLRLGLITSAG SAAYNDFIQTLTASGYGFKVFVADAMMQGDQTEKSVMRALDALARLEVDLVSIVRGGGSKTDLYFLDNEAIARRIAGFGK PVWTGIGHEIDTSVLDYVANRSFKTPTAAAEELVARFIQMRRQLDEATNTLQTVWTYRLKLDRDYLTRAMTGIRQGSRKL LDVTASFLREQAKELRLKVQERLSTEQVVIGRRTERLRSLPMAMIQNLAERLAAKRQELRSRTYSRISRSGDTLSVLKQR FVKERFLRRLLVERDSIMKVRQQLKTRFLSTFRIKSMTLANLKGRLKEERILLRFGTARNSLNDKMAILKAIDPQTVLQR GFALVYGRNGALIRSINDVTEKEIMTTRLTDGSLISEVIAKEKHHE
Sequences:
>Translated_526_residues MEKRFFPLSAITKRINELLEPAISKQFWVKAEISTGRERGGAFYCDLVETNAGGKIVAKIACTIWQSELATIRRAFKAKN MDLVLSNGTVVGFLCSLQFSPQYGLSLRVIDADPSIALGEMELKKRDIIERLQKEGMFETNKELSVPLLPLRLGLITSAG SAAYNDFIQTLTASGYGFKVFVADAMMQGDQTEKSVMRALDALARLEVDLVSIVRGGGSKTDLYFLDNEAIARRIAGFGK PVWTGIGHEIDTSVLDYVANRSFKTPTAAAEELVARFIQMRRQLDEATNTLQTVWTYRLKLDRDYLTRAMTGIRQGSRKL LDVTASFLREQAKELRLKVQERLSTEQVVIGRRTERLRSLPMAMIQNLAERLAAKRQELRSRTYSRISRSGDTLSVLKQR FVKERFLRRLLVERDSIMKVRQQLKTRFLSTFRIKSMTLANLKGRLKEERILLRFGTARNSLNDKMAILKAIDPQTVLQR GFALVYGRNGALIRSINDVTEKEIMTTRLTDGSLISEVIAKEKHHE >Mature_526_residues MEKRFFPLSAITKRINELLEPAISKQFWVKAEISTGRERGGAFYCDLVETNAGGKIVAKIACTIWQSELATIRRAFKAKN MDLVLSNGTVVGFLCSLQFSPQYGLSLRVIDADPSIALGEMELKKRDIIERLQKEGMFETNKELSVPLLPLRLGLITSAG SAAYNDFIQTLTASGYGFKVFVADAMMQGDQTEKSVMRALDALARLEVDLVSIVRGGGSKTDLYFLDNEAIARRIAGFGK PVWTGIGHEIDTSVLDYVANRSFKTPTAAAEELVARFIQMRRQLDEATNTLQTVWTYRLKLDRDYLTRAMTGIRQGSRKL LDVTASFLREQAKELRLKVQERLSTEQVVIGRRTERLRSLPMAMIQNLAERLAAKRQELRSRTYSRISRSGDTLSVLKQR FVKERFLRRLLVERDSIMKVRQQLKTRFLSTFRIKSMTLANLKGRLKEERILLRFGTARNSLNDKMAILKAIDPQTVLQR GFALVYGRNGALIRSINDVTEKEIMTTRLTDGSLISEVIAKEKHHE
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=516, Percent_Identity=25.1937984496124, Blast_Score=118, Evalue=7e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 59586; Mature: 59586
Theoretical pI: Translated: 10.67; Mature: 10.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKRFFPLSAITKRINELLEPAISKQFWVKAEISTGRERGGAFYCDLVETNAGGKIVAKI CCCCCCCHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHH ACTIWQSELATIRRAFKAKNMDLVLSNGTVVGFLCSLQFSPQYGLSLRVIDADPSIALGE HHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEEECCCCEEECH MELKKRDIIERLQKEGMFETNKELSVPLLPLRLGLITSAGSAAYNDFIQTLTASGYGFKV HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE FVADAMMQGDQTEKSVMRALDALARLEVDLVSIVRGGGSKTDLYFLDNEAIARRIAGFGK EEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCC PVWTGIGHEIDTSVLDYVANRSFKTPTAAAEELVARFIQMRRQLDEATNTLQTVWTYRLK HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE LDRDYLTRAMTGIRQGSRKLLDVTASFLREQAKELRLKVQERLSTEQVVIGRRTERLRSL ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC PMAMIQNLAERLAAKRQELRSRTYSRISRSGDTLSVLKQRFVKERFLRRLLVERDSIMKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQQLKTRFLSTFRIKSMTLANLKGRLKEERILLRFGTARNSLNDKMAILKAIDPQTVLQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCHHHHHHC GFALVYGRNGALIRSINDVTEKEIMTTRLTDGSLISEVIAKEKHHE CCEEEECCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MEKRFFPLSAITKRINELLEPAISKQFWVKAEISTGRERGGAFYCDLVETNAGGKIVAKI CCCCCCCHHHHHHHHHHHHHHHHCHHHEEEEECCCCCCCCCEEEEEEEEECCCCHHHHHH ACTIWQSELATIRRAFKAKNMDLVLSNGTVVGFLCSLQFSPQYGLSLRVIDADPSIALGE HHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEEEEEECCCCCCEEEEEECCCCEEECH MELKKRDIIERLQKEGMFETNKELSVPLLPLRLGLITSAGSAAYNDFIQTLTASGYGFKV HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEE FVADAMMQGDQTEKSVMRALDALARLEVDLVSIVRGGGSKTDLYFLDNEAIARRIAGFGK EEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCC PVWTGIGHEIDTSVLDYVANRSFKTPTAAAEELVARFIQMRRQLDEATNTLQTVWTYRLK HHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE LDRDYLTRAMTGIRQGSRKLLDVTASFLREQAKELRLKVQERLSTEQVVIGRRTERLRSL ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC PMAMIQNLAERLAAKRQELRSRTYSRISRSGDTLSVLKQRFVKERFLRRLLVERDSIMKV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RQQLKTRFLSTFRIKSMTLANLKGRLKEERILLRFGTARNSLNDKMAILKAIDPQTVLQR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHCCHHHHHHC GFALVYGRNGALIRSINDVTEKEIMTTRLTDGSLISEVIAKEKHHE CCEEEECCCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA