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The map label for this gene is yqhC [H]

Identifier: 118578557

GI number: 118578557

Start: 128282

End: 129244

Strand: Direct

Name: yqhC [H]

Synonym: Ppro_0111

Alternate gene names: 118578557

Gene position: 128282-129244 (Clockwise)

Preceding gene: 118578555

Following gene: 118578581

Centisome position: 3.2

GC content: 64.07

Gene sequence:

>963_bases
ATGCAGGTGGAGGATGGTATGGAAAAAGAAACGCTTGAACGGGATATTGGGAAGGAATGGCTGGATAGTGCGGTTGGAAC
GTTGGCGGAGAACATTGCCCGATGGGCCGGCGAGGGGGAGCGATTCGACACCCCGGTGCCGGGGTTGTCGCTCTTCCGCC
GGGAAAATGTGACCGAGCCGACCACCGGCATGTACGAGCCGAGCATCTGCCTGGTGGCCCAGGGGGCCAAGCGGGTGGTG
CTGGGGGAGGATTCCTTCATCTATGACGCGCGCCACTACCTGATCACCTCCGTGCATCTCCCCACGGTGGTGCAGATCCT
GGAGGCGAGCCGAGAGAAACCGTACCTGGGGCTCAGGTTGAAACTTGACCTGCGCGAGGTGTCCCAGCTGATGGTGGACA
GTAACCTCCCTCCGCCCCAGGGGGGGCAGGCGGGGCGCGGCATGGCGGTGGGGGAGGTCACGCCGGCGCTGGTGGCAGCC
CTGCAGCGGTTGGTCGGCCTGCTGGACGACCAGCGGGACATCCCGATCCTGGCGCCGATCATCCAGCGGGAGATCATCTA
CCGTCTGCTGGTGGGGGATCAGGGCGCTCGTCTGCGCCAGATCGCTTCGGCGGGAACCCAGAGTCACCAGATCGCGCGGG
CAATCGACTGGCTGAAGGGGAACTTCGACCAGTCGCTGCGCATCGATGACCTGGCGGCCCATGTGCGCATGAGCACCTCC
ACCTTTCATCAGCACTTCCGCTCCATGACCGCCTTAAGCCCTTTGCAGTTCCAGAAGCAGCTGCGCCTGCAGGAAGCCAG
ACGCCTGATGCTGGCGGAACATCTGGATGCGGCGACCGCGGCGATTCAGGTGGGCTACGAGAGCCCCTCCCAGTTCAGCC
GCGAATACAATCGCCTGTTCGGGGCCCCGCCGCTCAGGGACATCACAAGCTTGCGTCACATGGCTGTTGGCGAGAGAGCA
TAG

Upstream 100 bases:

>100_bases
TCCCGGCTTATGTTGGACCGGTAGACCGATCCTCTCTATTTCTTGCCCGATCCTGCGGCGGGGTGAAAAAACGTTGTCAG
GCTAGCAGGGGCGGGATAGC

Downstream 100 bases:

>100_bases
AACGTGCGCGGCCGAACCGTTTTTGGATTGGGGACGAAACGAGGCGCTAGGCCCTGTTCGCCGGGATATGCGGTCAGGAA
AGGAGTGCTTCTGCCTGAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MQVEDGMEKETLERDIGKEWLDSAVGTLAENIARWAGEGERFDTPVPGLSLFRRENVTEPTTGMYEPSICLVAQGAKRVV
LGEDSFIYDARHYLITSVHLPTVVQILEASREKPYLGLRLKLDLREVSQLMVDSNLPPPQGGQAGRGMAVGEVTPALVAA
LQRLVGLLDDQRDIPILAPIIQREIIYRLLVGDQGARLRQIASAGTQSHQIARAIDWLKGNFDQSLRIDDLAAHVRMSTS
TFHQHFRSMTALSPLQFQKQLRLQEARRLMLAEHLDAATAAIQVGYESPSQFSREYNRLFGAPPLRDITSLRHMAVGERA

Sequences:

>Translated_320_residues
MQVEDGMEKETLERDIGKEWLDSAVGTLAENIARWAGEGERFDTPVPGLSLFRRENVTEPTTGMYEPSICLVAQGAKRVV
LGEDSFIYDARHYLITSVHLPTVVQILEASREKPYLGLRLKLDLREVSQLMVDSNLPPPQGGQAGRGMAVGEVTPALVAA
LQRLVGLLDDQRDIPILAPIIQREIIYRLLVGDQGARLRQIASAGTQSHQIARAIDWLKGNFDQSLRIDDLAAHVRMSTS
TFHQHFRSMTALSPLQFQKQLRLQEARRLMLAEHLDAATAAIQVGYESPSQFSREYNRLFGAPPLRDITSLRHMAVGERA
>Mature_320_residues
MQVEDGMEKETLERDIGKEWLDSAVGTLAENIARWAGEGERFDTPVPGLSLFRRENVTEPTTGMYEPSICLVAQGAKRVV
LGEDSFIYDARHYLITSVHLPTVVQILEASREKPYLGLRLKLDLREVSQLMVDSNLPPPQGGQAGRGMAVGEVTPALVAA
LQRLVGLLDDQRDIPILAPIIQREIIYRLLVGDQGARLRQIASAGTQSHQIARAIDWLKGNFDQSLRIDDLAAHVRMSTS
TFHQHFRSMTALSPLQFQKQLRLQEARRLMLAEHLDAATAAIQVGYESPSQFSREYNRLFGAPPLRDITSLRHMAVGERA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=302, Percent_Identity=33.112582781457, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35698; Mature: 35698

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVEDGMEKETLERDIGKEWLDSAVGTLAENIARWAGEGERFDTPVPGLSLFRRENVTEP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCC
TTGMYEPSICLVAQGAKRVVLGEDSFIYDARHYLITSVHLPTVVQILEASREKPYLGLRL
CCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
KLDLREVSQLMVDSNLPPPQGGQAGRGMAVGEVTPALVAALQRLVGLLDDQRDIPILAPI
EECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IQREIIYRLLVGDQGARLRQIASAGTQSHQIARAIDWLKGNFDQSLRIDDLAAHVRMSTS
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TFHQHFRSMTALSPLQFQKQLRLQEARRLMLAEHLDAATAAIQVGYESPSQFSREYNRLF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHC
GAPPLRDITSLRHMAVGERA
CCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQVEDGMEKETLERDIGKEWLDSAVGTLAENIARWAGEGERFDTPVPGLSLFRRENVTEP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCC
TTGMYEPSICLVAQGAKRVVLGEDSFIYDARHYLITSVHLPTVVQILEASREKPYLGLRL
CCCCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
KLDLREVSQLMVDSNLPPPQGGQAGRGMAVGEVTPALVAALQRLVGLLDDQRDIPILAPI
EECHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IQREIIYRLLVGDQGARLRQIASAGTQSHQIARAIDWLKGNFDQSLRIDDLAAHVRMSTS
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TFHQHFRSMTALSPLQFQKQLRLQEARRLMLAEHLDAATAAIQVGYESPSQFSREYNRLF
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHC
GAPPLRDITSLRHMAVGERA
CCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]