Click here to switch to the map view.

The map label for this gene is rluF [H]

Identifier: 118479700

GI number: 118479700

Start: 4352287

End: 4352976

Strand: Reverse

Name: rluF [H]

Synonym: BALH_4134

Alternate gene names: 118479700

Gene position: 4352976-4352287 (Counterclockwise)

Preceding gene: 118479701

Following gene: 118479699

Centisome position: 82.8

GC content: 38.12

Gene sequence:

>690_bases
ATGAAAATCAACCAATATATAAGCGAAGCAAATTCTTGCTCAAGACGCGAAACAGATCGCCTTATTAAAGCCGGGCGCGT
AGCGATTAACGGCGAAATATGTACGCACGGTGCACTTGTTAATGAAGGTGATGTTGTAACGATTGATGGACAGGTTATTG
CAAAAGAAGAGAAAGAAAAGGTGTATATTGCCTTTCATAAACCAGTTGGCATTACTTGTACAGCAGCCGATCATATTGAT
GATAATATTATTGAGTATATTAATTACCCAGAGCGTATCTTTCCTGTTGGACGATTAGATAAAGCATCAGAAGGACTTAT
TTTATTAACGAATGACGGCGGGATTGCCAATCAAATTTTACACGGTGATCATGAGCACGAGAAGGAATATGTTGTTACAG
TTGATAAACCTTTTACAGATTGGTTTATGAATGAGATGTCCAGCGGTGTAAAGATTAAAGATGGAATGACTAAGCCATGT
AAAGTGACGAGAGTGGATCAGTCTACGTTTCGCATCGTTTTAACGCAAGGAATGAACAGACAAATTCGTAGAATGAGCCG
AGCTTTCGGGTTTACTGTAACAAAGTTAAAGCGAGAACGCATTATGAATATAGAGCTAAATGATCTTGAAGTAGGAAAGT
GGCGAGACATTACAGCTGAAGAATTAGAATTATTAATAGGACAGTTATAG

Upstream 100 bases:

>100_bases
TATTTATTTAGTTGTTTTTGCGAAGTAAACGAGCGTCAATCGTGGCAGAGTAATATTGCCATAGATTGACGCTTTTAATA
TATATGAAAAGGAATAAGTT

Downstream 100 bases:

>100_bases
GGAGGAAAAATTTTCTTCCTATATTTTTTTGTCAGAAAAAATAAAACTATTGATTTTTTAAAAAATAGCCCATATAATAA
AAAACAACAAGTTTCGACAA

Product: pseudouridylate synthase

Products: NA

Alternate protein names: rRNA pseudouridylate synthase F; rRNA-uridine isomerase F [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKINQYISEANSCSRRETDRLIKAGRVAINGEICTHGALVNEGDVVTIDGQVIAKEEKEKVYIAFHKPVGITCTAADHID
DNIIEYINYPERIFPVGRLDKASEGLILLTNDGGIANQILHGDHEHEKEYVVTVDKPFTDWFMNEMSSGVKIKDGMTKPC
KVTRVDQSTFRIVLTQGMNRQIRRMSRAFGFTVTKLKRERIMNIELNDLEVGKWRDITAEELELLIGQL

Sequences:

>Translated_229_residues
MKINQYISEANSCSRRETDRLIKAGRVAINGEICTHGALVNEGDVVTIDGQVIAKEEKEKVYIAFHKPVGITCTAADHID
DNIIEYINYPERIFPVGRLDKASEGLILLTNDGGIANQILHGDHEHEKEYVVTVDKPFTDWFMNEMSSGVKIKDGMTKPC
KVTRVDQSTFRIVLTQGMNRQIRRMSRAFGFTVTKLKRERIMNIELNDLEVGKWRDITAEELELLIGQL
>Mature_229_residues
MKINQYISEANSCSRRETDRLIKAGRVAINGEICTHGALVNEGDVVTIDGQVIAKEEKEKVYIAFHKPVGITCTAADHID
DNIIEYINYPERIFPVGRLDKASEGLILLTNDGGIANQILHGDHEHEKEYVVTVDKPFTDWFMNEMSSGVKIKDGMTKPC
KVTRVDQSTFRIVLTQGMNRQIRRMSRAFGFTVTKLKRERIMNIELNDLEVGKWRDITAEELELLIGQL

Specific function: Responsible for synthesis of pseudouridine from uracil- 2604 in 23S ribosomal RNA [H]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=223, Percent_Identity=52.0179372197309, Blast_Score=223, Evalue=1e-59,
Organism=Escherichia coli, GI1788510, Length=233, Percent_Identity=30.9012875536481, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787524, Length=233, Percent_Identity=33.0472103004292, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI87081838, Length=182, Percent_Identity=28.021978021978, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25979; Mature: 25979

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50889 S4 ; PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINQYISEANSCSRRETDRLIKAGRVAINGEICTHGALVNEGDVVTIDGQVIAKEEKEK
CCCHHHHHHHHCCHHHHHHHHHHHCEEEECCCEEECCCEECCCCEEEECCEEEEECCCCE
VYIAFHKPVGITCTAADHIDDNIIEYINYPERIFPVGRLDKASEGLILLTNDGGIANQIL
EEEEEECCCCEEEEECCCCCHHHHHHCCCCHHCCCCCCCCCCCCCEEEEECCCCHHHHHH
HGDHEHEKEYVVTVDKPFTDWFMNEMSSGVKIKDGMTKPCKVTRVDQSTFRIVLTQGMNR
CCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCEEEEEECCCCH
QIRRMSRAFGFTVTKLKRERIMNIELNDLEVGKWRDITAEELELLIGQL
HHHHHHHHHCHHHHHHHHHHEEEEEECCEECCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MKINQYISEANSCSRRETDRLIKAGRVAINGEICTHGALVNEGDVVTIDGQVIAKEEKEK
CCCHHHHHHHHCCHHHHHHHHHHHCEEEECCCEEECCCEECCCCEEEECCEEEEECCCCE
VYIAFHKPVGITCTAADHIDDNIIEYINYPERIFPVGRLDKASEGLILLTNDGGIANQIL
EEEEEECCCCEEEEECCCCCHHHHHHCCCCHHCCCCCCCCCCCCCEEEEECCCCHHHHHH
HGDHEHEKEYVVTVDKPFTDWFMNEMSSGVKIKDGMTKPCKVTRVDQSTFRIVLTQGMNR
CCCCCCCCEEEEEECCCHHHHHHHHHCCCEEEECCCCCCEEEEEECCCCEEEEEECCCCH
QIRRMSRAFGFTVTKLKRERIMNIELNDLEVGKWRDITAEELELLIGQL
HHHHHHHHHCHHHHHHHHHHEEEEEECCEECCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]