Click here to switch to the map view.

The map label for this gene is yjdI [H]

Identifier: 118478618

GI number: 118478618

Start: 3188817

End: 3189293

Strand: Reverse

Name: yjdI [H]

Synonym: BALH_2997

Alternate gene names: 118478618

Gene position: 3189293-3188817 (Counterclockwise)

Preceding gene: 118478619

Following gene: 118478616

Centisome position: 60.67

GC content: 38.36

Gene sequence:

>477_bases
ATGAAAAAAGATAAAACAAATGCGATGCGAATATTAGATAAAGAAAAGATCGAATATTCGATGATGTCATATGACCCAGA
CGATGGAAAAATTGATGGCGTATCAGTAGCTGAGAAAATTGGACGAGAAGTGAGAGAAGTATATAAAACGTTAATCGCTC
AAGGGAATAGTAAAAATTATCATGTGTTTATCATTCCAGTAGATGAGGAACTGAACTTGAAAGCTGCCGCAAAATCAGTT
GGTGAAAAGAAGATTGAAATGATTCCTGTAAAAGATATTACGAAAGTGTCAGGATACATTCGCGGTGGTTGTTCACCAGT
AGGGATGAAGAAGTTATTTTCAACATGCATTGATGCGACTGCGCAATCGCTTGAAACGATCATAGTAAGCGGCGGGAAGA
TTGGTATACAAATTGAGCTGAAAGTGGATGACTTAGCGAGAGTGACGAGAGCGCAGTTTGGTGAAATCACGAAATGA

Upstream 100 bases:

>100_bases
GCATAAATATATCTACAAAAATGTGAAGTTATGCAGGTGAAATGGAAAAGGGTGTATAATAAAACTTAATAATATGAAAT
AACCTTTTAAGGAGACCGTT

Downstream 100 bases:

>100_bases
TTATACATAGGGAAAGAAGATCTAGGTTTATAGGATAATTAGTCCATTATGGGGGCTGATTATCCTTTTTTATACAATTT
TTTGGCTAATTCAGTAACAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKSV
GEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDATAQSLETIIVSGGKIGIQIELKVDDLARVTRAQFGEITK

Sequences:

>Translated_158_residues
MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKSV
GEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDATAQSLETIIVSGGKIGIQIELKVDDLARVTRAQFGEITK
>Mature_158_residues
MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKSV
GEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDATAQSLETIIVSGGKIGIQIELKVDDLARVTRAQFGEITK

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=41.025641025641, Blast_Score=114, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17443; Mature: 17443

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKSVGEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDAT
EEEEEECCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AQSLETIIVSGGKIGIQIELKVDDLARVTRAQFGEITK
HHHHHHEEEECCEEEEEEEEEHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKDKTNAMRILDKEKIEYSMMSYDPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKSVGEKKIEMIPVKDITKVSGYIRGGCSPVGMKKLFSTCIDAT
EEEEEECCCCCCHHHHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AQSLETIIVSGGKIGIQIELKVDDLARVTRAQFGEITK
HHHHHHEEEECCEEEEEEEEEHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]