Click here to switch to the map view.

The map label for this gene is abrB [H]

Identifier: 118477449

GI number: 118477449

Start: 1929491

End: 1929814

Strand: Direct

Name: abrB [H]

Synonym: BALH_1770

Alternate gene names: 118477449

Gene position: 1929491-1929814 (Clockwise)

Preceding gene: 118477448

Following gene: 118477450

Centisome position: 36.7

GC content: 29.94

Gene sequence:

>324_bases
GTGGAAAATTTAATAAAAAGTAAGGGAGGAAGTAATATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACG
AATTGTTATTCCTAAAGAATTACGTGATGTATTGGGAATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACA
AAGTCATTTTACAAAAATATCAACCTTACAATGCTTGTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCA
AATGGAAACATTACTGTTAGTATAGATGGAGCGAAATATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGT
TTAG

Upstream 100 bases:

>100_bases
AGAGATTATCTATTCGTTAAATGTGTTTTTTTAACTTGAGTACAAAATTTTCTAAAAAGAGGCAGGTATTACCAAAAAGT
GATAAAATGGAAAAAGCGAG

Downstream 100 bases:

>100_bases
TCTTAATTTATATTATTTTAAAAATTTCATATCATTCTTTAAAGACAATAAAAGGACCAATTTAGTGGTCCTTTTATGTT
GGTTATTGGTTGTACCAATC

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MENLIKSKGGSNMKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLA
NGNITVSIDGAKYLIKEIEKFLNKSEV

Sequences:

>Translated_107_residues
MENLIKSKGGSNMKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLA
NGNITVSIDGAKYLIKEIEKFLNKSEV
>Mature_107_residues
MENLIKSKGGSNMKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLA
NGNITVSIDGAKYLIKEIEKFLNKSEV

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 11905; Mature: 11905

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLIKSKGGSNMKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKY
CCCCCCCCCCCCCCHHHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEHHC
QPYNACQITGDVSNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEV
CCCCEEEEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENLIKSKGGSNMKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKY
CCCCCCCCCCCCCCHHHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEHHC
QPYNACQITGDVSNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEV
CCCCEEEEEECCCCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]