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The map label for this gene is ygiD [H]

Identifier: 118477318

GI number: 118477318

Start: 1781938

End: 1782702

Strand: Reverse

Name: ygiD [H]

Synonym: BALH_1635

Alternate gene names: 118477318

Gene position: 1782702-1781938 (Counterclockwise)

Preceding gene: 118477321

Following gene: 118477314

Centisome position: 33.91

GC content: 35.95

Gene sequence:

>765_bases
ATGATGATGCCATCATTATTTTTAGCACACGGATCACCGATGCTCGCTATTCAAGATACAGACTATACACGTTTTTTAAA
AACACTTGGTGAAACATATAAACCGAAAGCTATTGTTATTTTTACTGCTCACTGGGAAAGTGAAGTATTAACGTTTTCCT
CATCAGATAACGAATATGAAACAATTTATGATTTTGGAGGTTTTCCTCCAGAGTTATACGAAATTAACTATCGTGCAAAA
GGTTCTTCTAGCATTGCATCTATGTTAGAAACAAAATTTAAAAATAAAGGTATTCCAGTCCATCATAATATGACGAGAGG
TTTAGACCACGGCTCATGGACACTCTTGCACCGTATGTATCCAGAAGCAAATATTCCTGTCGTACAAATATCAGTCAATC
CATTCCTTTCTGCAAAAGAACAATTTAAAATTGGAGAAGCATTAAAAGGACTTGGACAAGAAGATATTTTAGTAATCGGG
AGCGGTGTTACCGTTCATAACTTACGAGCACTGAAATGGAATCAAAGTACACCCGAACAATGGGCAATTGAATTTGATGA
TTGGATTATAAAACATATGCAGACTAACAATAAAGATGCATTATTTAATTGGGAGAAAAATGCCCCTCATGCTCAATTAG
CTGTACCAAGAGCAGAGCATTTTGTTCCTTTATTTATCGCTATGGGAAGTGGTGAAAATAGTGGTGAAGTCATTCACCGC
AGTTACGAGCTTGGTACGTTAAGTTATCTTTGCCTCCAATTTTAA

Upstream 100 bases:

>100_bases
CACTTTTCTAATTAGCTCTTAAATTAATATGTTGACGAATCATTCGTAAAATTATATAGTTACTTACATAAAGTAATTAT
TATATTTTTGGGAGGTTTCT

Downstream 100 bases:

>100_bases
ATAAAAAGGATGAAGCAATCATTGCTTCATCCTTTCCTTTTTTATTCACCTAGTTAACTAACTTCCAAATGTCGTTTCTC
TGATACTTCTTCGTTCTTAT

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MMMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTFSSSDNEYETIYDFGGFPPELYEINYRAK
GSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIG
SGVTVHNLRALKWNQSTPEQWAIEFDDWIIKHMQTNNKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENSGEVIHR
SYELGTLSYLCLQF

Sequences:

>Translated_254_residues
MMMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTFSSSDNEYETIYDFGGFPPELYEINYRAK
GSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIG
SGVTVHNLRALKWNQSTPEQWAIEFDDWIIKHMQTNNKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENSGEVIHR
SYELGTLSYLCLQF
>Mature_254_residues
MMMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTFSSSDNEYETIYDFGGFPPELYEINYRAK
GSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMYPEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIG
SGVTVHNLRALKWNQSTPEQWAIEFDDWIIKHMQTNNKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENSGEVIHR
SYELGTLSYLCLQF

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=260, Percent_Identity=36.9230769230769, Blast_Score=160, Evalue=6e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28810; Mature: 28810

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTFSSSDNEYE
CCCCCEEEECCCEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
TIYDFGGFPPELYEINYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMY
EEEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECC
PEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQSTPEQ
CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHH
WAIEFDDWIIKHMQTNNKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENSGEVIHR
EEEEHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEE
SYELGTLSYLCLQF
EECCCHHHHHEECC
>Mature Secondary Structure
MMMPSLFLAHGSPMLAIQDTDYTRFLKTLGETYKPKAIVIFTAHWESEVLTFSSSDNEYE
CCCCCEEEECCCEEEEEECCCHHHHHHHHCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
TIYDFGGFPPELYEINYRAKGSSSIASMLETKFKNKGIPVHHNMTRGLDHGSWTLLHRMY
EEEECCCCCHHHEEEEEECCCCHHHHHHHHHHHHCCCCCEECCHHCCCCCCCEEEEEECC
PEANIPVVQISVNPFLSAKEQFKIGEALKGLGQEDILVIGSGVTVHNLRALKWNQSTPEQ
CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEEEECCCCCHH
WAIEFDDWIIKHMQTNNKDALFNWEKNAPHAQLAVPRAEHFVPLFIAMGSGENSGEVIHR
EEEEHHHHHHHHHCCCCCCEEEEECCCCCCCEEECCCCCCCEEEEEEECCCCCCCCEEEE
SYELGTLSYLCLQF
EECCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]