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The map label for this gene is rpfG [H]

Identifier: 117920019

GI number: 117920019

Start: 1838793

End: 1839998

Strand: Direct

Name: rpfG [H]

Synonym: Shewana3_1571

Alternate gene names: 117920019

Gene position: 1838793-1839998 (Clockwise)

Preceding gene: 117920018

Following gene: 117920020

Centisome position: 36.98

GC content: 49.09

Gene sequence:

>1206_bases
GTGGCAAAAGCAGCCCAACGAAAACTATTACTTTCCGAACTTCAACTTGGCATGAGGGTCAAGTTGCCTTTGTCATGGAC
GAATCACCCTTTTTTATTTAACCGTGTGGATATCAGTAGTCCGGCTCACATTGAGATGATCCGCGGACTCGGTGTGCCCT
ATGTGTATCTGATCTCAGGCAGTAGTGATGAACTCGAATCGACGGATGAAGAGGAAAATGTCGAGGAGATTGAAGAAGCA
CCACCGGAGCGCGACTTAAAGGCCGATACCCGTAAGGCGATGCGTTTTAGCCAGAGGCGTTTTTTAGAGAGCGTTAACCA
GTGCCGCAATGTGTATGGCAAAGTGGTGAGCGACCCAGAAGGCGCTTATCGCTTGTCGGCCGCCTTAGTAGAAGATTTAC
TCAGCCACCTGCAAGAGGTCGAGAAACCTTTCCTCACTTTGGTCGGAATGGATGAAAAAGATGTCAGTGTGACTCAACAC
GGCATCTCGGTAGCAGTATTAGCCATGATGATAGGTCAGGCACTCGACTTGCCGGCGCGGGATCTGCGCGATATTGCCTT
GGGGAGCCTGTTCCACGATATAGGCAAACTCAAAGTCCCGGATGTGATCCGCCGTAAACGGGGCGCATTAACTCCCCATG
AGGCCAATTACCTGCAAATGCACCCGAACTTTGGTTATGACATGCTGAATCGCTCGGGACTTTTCCCAAAGGAAGTGCTG
AATATTGTATTGCATCACCATGAGTTTATTGATGGTTCAGGTTTTCCCGATGGACTCTCAGGGGCCAAAATCCCCATTAC
CACTCAAATAGTGAGTCTGGCGAACGATTACGATCAGCAGCTCAGTGGTGAGCAGGCGTCTTCACCGCAGGTGGCTTTAG
GTTATTTATTTAAAAATCGTGCGAGTAAACATGCCGAATCCTTAATTGCGGTGTTGGTTAAGATTTTAGGTATCTATCCG
CCGGGTACTATCGTCAAGTTATCCGACGACACTGTTGCTAAGGTGATCATGACCACCAAAGAGGTGAGTCAGCCGCAGGT
GTGGGCCTGTAAGGAAGATGGCAGCGAGGCCTCGTTACGCTTTTTAAGTGATGAAGGGGTGACGGTACAAAAAACCATTC
GCGCGGAAGAGTTAACCGAGGGCGCGATCCGCACCTTGCAAATGGATAAAGGCATTAGTTTTTATTTTAGCTCGTTCCAA
GCTTGA

Upstream 100 bases:

>100_bases
TTTTGTTGAATCATCTATAGTTATATGTACTTAGCTTAAATGTGCGACCGAAGAAGCGAAAATTTGATGCGTCTTGCGTA
CATGAAAGGAGTCATATTGC

Downstream 100 bases:

>100_bases
ATCACGCCACCTGAGTTCCGTATGCTATTGGCCGAAATACCTTGGGTTGTCGGTCAATGGAAATGGAGCTAAGAGTGGCA
GATCAAAAAAGTGTTGCGGT

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MAKAAQRKLLLSELQLGMRVKLPLSWTNHPFLFNRVDISSPAHIEMIRGLGVPYVYLISGSSDELESTDEEENVEEIEEA
PPERDLKADTRKAMRFSQRRFLESVNQCRNVYGKVVSDPEGAYRLSAALVEDLLSHLQEVEKPFLTLVGMDEKDVSVTQH
GISVAVLAMMIGQALDLPARDLRDIALGSLFHDIGKLKVPDVIRRKRGALTPHEANYLQMHPNFGYDMLNRSGLFPKEVL
NIVLHHHEFIDGSGFPDGLSGAKIPITTQIVSLANDYDQQLSGEQASSPQVALGYLFKNRASKHAESLIAVLVKILGIYP
PGTIVKLSDDTVAKVIMTTKEVSQPQVWACKEDGSEASLRFLSDEGVTVQKTIRAEELTEGAIRTLQMDKGISFYFSSFQ
A

Sequences:

>Translated_401_residues
MAKAAQRKLLLSELQLGMRVKLPLSWTNHPFLFNRVDISSPAHIEMIRGLGVPYVYLISGSSDELESTDEEENVEEIEEA
PPERDLKADTRKAMRFSQRRFLESVNQCRNVYGKVVSDPEGAYRLSAALVEDLLSHLQEVEKPFLTLVGMDEKDVSVTQH
GISVAVLAMMIGQALDLPARDLRDIALGSLFHDIGKLKVPDVIRRKRGALTPHEANYLQMHPNFGYDMLNRSGLFPKEVL
NIVLHHHEFIDGSGFPDGLSGAKIPITTQIVSLANDYDQQLSGEQASSPQVALGYLFKNRASKHAESLIAVLVKILGIYP
PGTIVKLSDDTVAKVIMTTKEVSQPQVWACKEDGSEASLRFLSDEGVTVQKTIRAEELTEGAIRTLQMDKGISFYFSSFQ
A
>Mature_400_residues
AKAAQRKLLLSELQLGMRVKLPLSWTNHPFLFNRVDISSPAHIEMIRGLGVPYVYLISGSSDELESTDEEENVEEIEEAP
PERDLKADTRKAMRFSQRRFLESVNQCRNVYGKVVSDPEGAYRLSAALVEDLLSHLQEVEKPFLTLVGMDEKDVSVTQHG
ISVAVLAMMIGQALDLPARDLRDIALGSLFHDIGKLKVPDVIRRKRGALTPHEANYLQMHPNFGYDMLNRSGLFPKEVLN
IVLHHHEFIDGSGFPDGLSGAKIPITTQIVSLANDYDQQLSGEQASSPQVALGYLFKNRASKHAESLIAVLVKILGIYPP
GTIVKLSDDTVAKVIMTTKEVSQPQVWACKEDGSEASLRFLSDEGVTVQKTIRAEELTEGAIRTLQMDKGISFYFSSFQA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 44519; Mature: 44387

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKAAQRKLLLSELQLGMRVKLPLSWTNHPFLFNRVDISSPAHIEMIRGLGVPYVYLISG
CCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
SSDELESTDEEENVEEIEEAPPERDLKADTRKAMRFSQRRFLESVNQCRNVYGKVVSDPE
CCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAYRLSAALVEDLLSHLQEVEKPFLTLVGMDEKDVSVTQHGISVAVLAMMIGQALDLPAR
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
DLRDIALGSLFHDIGKLKVPDVIRRKRGALTPHEANYLQMHPNFGYDMLNRSGLFPKEVL
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHCCCCCCHHHHH
NIVLHHHEFIDGSGFPDGLSGAKIPITTQIVSLANDYDQQLSGEQASSPQVALGYLFKNR
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ASKHAESLIAVLVKILGIYPPGTIVKLSDDTVAKVIMTTKEVSQPQVWACKEDGSEASLR
HHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEE
FLSDEGVTVQKTIRAEELTEGAIRTLQMDKGISFYFSSFQA
EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
>Mature Secondary Structure 
AKAAQRKLLLSELQLGMRVKLPLSWTNHPFLFNRVDISSPAHIEMIRGLGVPYVYLISG
CCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEEEEC
SSDELESTDEEENVEEIEEAPPERDLKADTRKAMRFSQRRFLESVNQCRNVYGKVVSDPE
CCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GAYRLSAALVEDLLSHLQEVEKPFLTLVGMDEKDVSVTQHGISVAVLAMMIGQALDLPAR
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHH
DLRDIALGSLFHDIGKLKVPDVIRRKRGALTPHEANYLQMHPNFGYDMLNRSGLFPKEVL
HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCHHHHCCCCCCHHHHH
NIVLHHHEFIDGSGFPDGLSGAKIPITTQIVSLANDYDQQLSGEQASSPQVALGYLFKNR
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ASKHAESLIAVLVKILGIYPPGTIVKLSDDTVAKVIMTTKEVSQPQVWACKEDGSEASLR
HHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCEEE
FLSDEGVTVQKTIRAEELTEGAIRTLQMDKGISFYFSSFQA
EECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]