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The map label for this gene is fliN [H]

Identifier: 117919798

GI number: 117919798

Start: 1563944

End: 1564318

Strand: Direct

Name: fliN [H]

Synonym: Shewana3_1350

Alternate gene names: 117919798

Gene position: 1563944-1564318 (Clockwise)

Preceding gene: 117919797

Following gene: 117919799

Centisome position: 31.45

GC content: 48.8

Gene sequence:

>375_bases
ATGAGTACAGATGATGATTGGGCAGCAGCCATGGCCGAACAGGCATTGGAAGAGGCTAATGCCATTGACCTTGACGAGCT
TGTAGACGAGTCACAGCCAATTAGTAAGGCCGAAGCCGCCAAACTAGACACTATTTTAGATATCCCTGTGACGATTTCGA
TGGAAGTTGGTCGCAGCTATATCAGCATTCGTAACCTGCTGCAGCTGAACCAAGGTTCTGTCGTGGAGTTGGACAGGGTG
GCGGGTGAGCCGCTAGATGTGATGGTCAATGGCACACTTATCGCCCATGGCGAAGTGGTTGTGGTTAACGATAAGTTTGG
TATCCGCCTAACGGATGTGATCAGTCAAACTGAGCGGATTAAAAAGCTTAAGTAA

Upstream 100 bases:

>100_bases
CGAAAAAATCCCACGTCCTGAAACGGTCAAATCCGAACTGCAATTAGTGACACGTAAAGGCAAAGCCAGAGACATATCCG
AATTATAAAGGTGAAGTGAG

Downstream 100 bases:

>100_bases
TTCAACGATAAACACGAAGCCTGAAGGAGCGAGATGAGCACATCGGTAATTCTCAGTCTAGTAGTAGCAACTCAGGCGAG
TGTTGCTGGCGTTGCTAACG

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 123

Protein sequence:

>124_residues
MSTDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRV
AGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Sequences:

>Translated_124_residues
MSTDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRV
AGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK
>Mature_123_residues
STDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSYISIRNLLQLNQGSVVELDRVA
GEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLK

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=120, Percent_Identity=45, Blast_Score=110, Evalue=4e-26,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13534; Mature: 13402

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSY
CCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHCCEEEECCEEEEHHHCHHH
ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI
HHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHH
KKLK
HCCC
>Mature Secondary Structure 
STDDDWAAAMAEQALEEANAIDLDELVDESQPISKAEAAKLDTILDIPVTISMEVGRSY
CCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHCCEEEECCEEEEHHHCHHH
ISIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERI
HHHHHHHHCCCCCEEEEHHHCCCCEEEEECCEEEECCEEEEEECCCCEEHHHHHHHHHHH
KKLK
HCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]