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The map label for this gene is oprF [H]

Identifier: 117919656

GI number: 117919656

Start: 1411175

End: 1411750

Strand: Reverse

Name: oprF [H]

Synonym: Shewana3_1207

Alternate gene names: 117919656

Gene position: 1411750-1411175 (Counterclockwise)

Preceding gene: 117919659

Following gene: 117919655

Centisome position: 28.39

GC content: 42.01

Gene sequence:

>576_bases
ATGCAATGGATTAAATTAACGTGTTTAGCGCTGAGCCTAAGCCAGATGTTACCAGCGTATGCATGGCAAGATACAGATCA
AGACGGCGTCCCGGATATTAAAGATGCCTGTCCAAACACACCAGCAAACACCACTGTGATGGCCAATGGCTGTGTTTACC
AAGCCGAAGTAAAATCCAGCAGTATTCAATGTGATCTCAATGACCCCAGTACTTATTCAGCCGCTGATTGTCATAATATT
GAGACCGCGATTGTGTATTTTGAGTTTGCGATTGCCGAAGTAGATTTATCGCAATGGAAAGCTTTAGCCTTAGTGAAAGC
TTTTTTAGACGCGAATACTGAGACTCGATTAACTTTAGTTGGGCATACGGACATTGTCGGTACGCCAGAGTTTAATTATC
AGTTATCACTACGACGGGCTCAAAATGTGAAACGTATTTTGGTTGAAGACTATGGCTTCAATCCAAATCGCTTTACCGTT
GTCGGTAAAGGTATATCTGAACCTGTTGCGGATAATCATTCCAGCGAAGGTCGCAGATTAAATCGACGAGTACAATTTAT
CGTCAATAATAACTAG

Upstream 100 bases:

>100_bases
ATACCAGACTAAGATGCTCATGCTAATGCAGTGCAAATCTCTTAGTGGTTTTAGCTACTCAAGATAAAATACAAGGTGAT
TTGTGGTGAAAATATCCGTA

Downstream 100 bases:

>100_bases
TTTTGTTAGCGTATTTTTAGGGAGTAATTTAATGGAAAACCTCGAAGGTTTATTAAAGCAGGCGCCTGATTTGGTCATGA
CCTATGGCTTAAAAATCTTA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MQWIKLTCLALSLSQMLPAYAWQDTDQDGVPDIKDACPNTPANTTVMANGCVYQAEVKSSSIQCDLNDPSTYSAADCHNI
ETAIVYFEFAIAEVDLSQWKALALVKAFLDANTETRLTLVGHTDIVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFTV
VGKGISEPVADNHSSEGRRLNRRVQFIVNNN

Sequences:

>Translated_191_residues
MQWIKLTCLALSLSQMLPAYAWQDTDQDGVPDIKDACPNTPANTTVMANGCVYQAEVKSSSIQCDLNDPSTYSAADCHNI
ETAIVYFEFAIAEVDLSQWKALALVKAFLDANTETRLTLVGHTDIVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFTV
VGKGISEPVADNHSSEGRRLNRRVQFIVNNN
>Mature_191_residues
MQWIKLTCLALSLSQMLPAYAWQDTDQDGVPDIKDACPNTPANTTVMANGCVYQAEVKSSSIQCDLNDPSTYSAADCHNI
ETAIVYFEFAIAEVDLSQWKALALVKAFLDANTETRLTLVGHTDIVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFTV
VGKGISEPVADNHSSEGRRLNRRVQFIVNNN

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 21261; Mature: 21261

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWIKLTCLALSLSQMLPAYAWQDTDQDGVPDIKDACPNTPANTTVMANGCVYQAEVKSS
CCCEEHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHCCCCCCCCEEEECCEEEEEEECCC
SIQCDLNDPSTYSAADCHNIETAIVYFEFAIAEVDLSQWKALALVKAFLDANTETRLTLV
EEEEECCCCCCCCCCCCCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCCCEEEEEE
GHTDIVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFTVVGKGISEPVADNHSSEGRRL
ECCCEECCCCCCEEEEHHHHCCHHEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
NRRVQFIVNNN
CEEEEEEEECC
>Mature Secondary Structure
MQWIKLTCLALSLSQMLPAYAWQDTDQDGVPDIKDACPNTPANTTVMANGCVYQAEVKSS
CCCEEHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHCCCCCCCCEEEECCEEEEEEECCC
SIQCDLNDPSTYSAADCHNIETAIVYFEFAIAEVDLSQWKALALVKAFLDANTETRLTLV
EEEEECCCCCCCCCCCCCCCEEEEEEEEEHHEECCHHHHHHHHHHHHHHCCCCCEEEEEE
GHTDIVGTPEFNYQLSLRRAQNVKRILVEDYGFNPNRFTVVGKGISEPVADNHSSEGRRL
ECCCEECCCCCCEEEEHHHHCCHHEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCEE
NRRVQFIVNNN
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]