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The map label for this gene is ycbZ [H]

Identifier: 117919609

GI number: 117919609

Start: 1367021

End: 1369438

Strand: Reverse

Name: ycbZ [H]

Synonym: Shewana3_1160

Alternate gene names: 117919609

Gene position: 1369438-1367021 (Counterclockwise)

Preceding gene: 117919612

Following gene: 117919607

Centisome position: 27.54

GC content: 49.21

Gene sequence:

>2418_bases
ATGCCTACCGTGCCCACAGCAACACCCGCCATCCCGTTAACGAGTCAACAGCTTTATCGTAAATCCGAACTTAAACAGCT
TAACCCTGAGTGTCAGTCTACCGCTCAGCTCACGCCACTCGATGATATTGTCGGTCAAGAACGTGCCCAACAGGCGGTGG
AATTCGCCATGGGGATCAAGGAAAAGGGCTATAACATTTATGCGATTGGCCAAAACGGCTTAGGTAAACGTACTATGATG
CTGCGTTACCTAAATCGCCATGATCCCATTGAACCGTCACTGTTTGACTGGTGCTATGTGGTTAACTTTGACGATACCCG
CAGTCCTAAAGTGCTCAAGCTGACCGCAGGAACGGGGCAAGAGTTTAAAAAGTCCATCGAAAAACTCATGCTAAAACTGG
TCAAAGCGCTGCCCTTAGCCTTCGATAACGAAATGTATTATGCCCGAGCTGAAAAGCTCAAAAGCCAACTAGCACAAAAA
CAAGAAGCCGCGCTGACAGAGCTGAGTGAAGAAGCCAAACAGAAAAACATTAGCCTCAGTTTAACCCTGCAGGGCGATTA
TCAAATGGTTGCCCTCAATGGCGAAGAGCCCCATGACGAGGTCTCCTTTGGCGCCTTAACCGAAGCCGAGCGCGCCCAGT
TTGAAAGCAATATCAATGGGCTCGAAGTTAAACTTCGCGGCATCATTCGACAAAATACCGAATGGGAAGAAGAGTTTAGC
GATACCCAACAGGAACACGACGAACAAGTCGCTAAAGATGTGCTGGTGCACTTTTTCAAACCCTTGAAAGACAAATACAA
ACATCAGCCCGAAGTCAGAGCCTTCTTAACGGGGATGCAGTCGGATATCTTAAGTAATTTAGATATTTTCCTTGAGGAGA
GTGAAGAGCAACTCGCCCTCGCCTACGCCTCCCTTGAAAAGAAAATGCCACGCCGCTATCAGGTCAACGTCATCGTATGC
CAAGGGGAGCAAAAATTCCCGATTGTGGTCGAAGAAAGCCCAAGCTACCACAGCCTGTTTGGCTATGTTGAGAACGCTAC
CTTTAGGGGCACAGTGTTTACCGACTTCTCACTCATCCGCCCAGGAAGCTTACACAAGGCCAACGGTGGCGTGCTGTTGA
TGGATGCCATCAAAGTGCTGGAGCGCCCCTATGTGTGGGACGGCTTGAAACGCGCACTGCGCTCACGCAAGTTAGATTTA
AGTTCCTTAGAGCGGGAAGTCTCACTGTCGGGCACTATCTCATTGGCGCCGGAACCTATTCCCTTAGATGTGAAGATCAT
TCTGTTTGGGGATCACGAAACCTATCAGCTTTTACAGCATTATGATCCTGATTTTAGTGAGTTATTTAGGATCACGGCCG
ATTTTGAAGATGTGATGGACAGAACCGATATCTCAGAGGCGCAATATGCACGATTTATTTCCAGCATAGTCCACGATAAC
AATATGTTGCACTGTGACCGCAGTGCCATCGCACGCATCATCGAATACAGTTCCCGTGAGGCGCAGGACCAACAAAAGCT
GTCGCTGCATTCGGCAAACATCGCCAATCTGCTGAGGGAATCAAACTTCTGCGCTAAGGCCGCCGCAAGTCAATGTATTG
AAAAACAGCACGTTGAGCAGGCACTGAAAAACCAAGAGCAACGGGTCTCACGCCTGCACGACAATATTATGGAGAGCTTT
ATCAACGGCACGACATTAATCAATACCCACGATAAAGTTGTCGGCCAAATCAATGCGTTATCAGTGATATCAACCTCAGA
TCATCAATTTGGTCTCCCGAATCGTATTACCGCAACCACCGCCTTCGGTAAGGGTGAAGTGCTGGATATTGAGCATAGGG
TTAAGCTCGGTGGGCGCATTCACTCTAAAGGAGTGTTAATCCTGACGGCTTATTTGGCTTCGGTCCTTGGTAAAACCGCG
CAAATCCCCCTCACCACCTATCTCACCTTCGAGCAATCCTACAGCGGTGTCGATGGTGATAGCGCCTCGATGGCCGAATG
CTGCGCCATCATCTCCGCCATCAGTGAGTTGCCCTTAAGGCAGGATATTGCCATTACCGGATCGATGAATCAGTTTGGTG
AGGCGCAACCCATCGGCGGCGTAAATGAAAAAATCGAAGGCTTTTTCGATGTGTGTAAGATTAAGGGCCGCTCATCGAGC
CAAGGGGTAATTATTCCCGAGTCGAATATCGCCAACCTCATGTTACGCCAAGACATTGTGGAAGCGGTTGAGCGTGGAGA
ATTCCATATTTGGGCGATTAGCCATGTTACCCAAGCGATGGCACTACTCCTAGGTAAAACGGCGGCGACCTTAGGAGGCG
ATGATGGGAAACACGCAGGCCATTATGCCCCAGAGTGCGTATTTGGGATTGCCCAGCAGAAACTCAATGCCCTGAGGGCG
CTCCCTAAAGCCAATTGA

Upstream 100 bases:

>100_bases
CACAACACTGATTTAAAGACAAATTACCGCCTTTTGATTGACAACAACATTATCCTATTGTCTACAATGGAAATAATCAG
GATGAAAAACAAGGATCTCT

Downstream 100 bases:

>100_bases
TCGTTGAACCAAAAGCAAAAGGGTTAGCTAAGCTAACCCTTTCTTATCGGTAATTGCTGCTCTGAGTTACACCAAGCTTG
CCAGCATTTCATCGCTATAG

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 805; Mature: 804

Protein sequence:

>805_residues
MPTVPTATPAIPLTSQQLYRKSELKQLNPECQSTAQLTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMM
LRYLNRHDPIEPSLFDWCYVVNFDDTRSPKVLKLTAGTGQEFKKSIEKLMLKLVKALPLAFDNEMYYARAEKLKSQLAQK
QEAALTELSEEAKQKNISLSLTLQGDYQMVALNGEEPHDEVSFGALTEAERAQFESNINGLEVKLRGIIRQNTEWEEEFS
DTQQEHDEQVAKDVLVHFFKPLKDKYKHQPEVRAFLTGMQSDILSNLDIFLEESEEQLALAYASLEKKMPRRYQVNVIVC
QGEQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKRALRSRKLDL
SSLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRITADFEDVMDRTDISEAQYARFISSIVHDN
NMLHCDRSAIARIIEYSSREAQDQQKLSLHSANIANLLRESNFCAKAAASQCIEKQHVEQALKNQEQRVSRLHDNIMESF
INGTTLINTHDKVVGQINALSVISTSDHQFGLPNRITATTAFGKGEVLDIEHRVKLGGRIHSKGVLILTAYLASVLGKTA
QIPLTTYLTFEQSYSGVDGDSASMAECCAIISAISELPLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRSSS
QGVIIPESNIANLMLRQDIVEAVERGEFHIWAISHVTQAMALLLGKTAATLGGDDGKHAGHYAPECVFGIAQQKLNALRA
LPKAN

Sequences:

>Translated_805_residues
MPTVPTATPAIPLTSQQLYRKSELKQLNPECQSTAQLTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMM
LRYLNRHDPIEPSLFDWCYVVNFDDTRSPKVLKLTAGTGQEFKKSIEKLMLKLVKALPLAFDNEMYYARAEKLKSQLAQK
QEAALTELSEEAKQKNISLSLTLQGDYQMVALNGEEPHDEVSFGALTEAERAQFESNINGLEVKLRGIIRQNTEWEEEFS
DTQQEHDEQVAKDVLVHFFKPLKDKYKHQPEVRAFLTGMQSDILSNLDIFLEESEEQLALAYASLEKKMPRRYQVNVIVC
QGEQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKRALRSRKLDL
SSLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRITADFEDVMDRTDISEAQYARFISSIVHDN
NMLHCDRSAIARIIEYSSREAQDQQKLSLHSANIANLLRESNFCAKAAASQCIEKQHVEQALKNQEQRVSRLHDNIMESF
INGTTLINTHDKVVGQINALSVISTSDHQFGLPNRITATTAFGKGEVLDIEHRVKLGGRIHSKGVLILTAYLASVLGKTA
QIPLTTYLTFEQSYSGVDGDSASMAECCAIISAISELPLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRSSS
QGVIIPESNIANLMLRQDIVEAVERGEFHIWAISHVTQAMALLLGKTAATLGGDDGKHAGHYAPECVFGIAQQKLNALRA
LPKAN
>Mature_804_residues
PTVPTATPAIPLTSQQLYRKSELKQLNPECQSTAQLTPLDDIVGQERAQQAVEFAMGIKEKGYNIYAIGQNGLGKRTMML
RYLNRHDPIEPSLFDWCYVVNFDDTRSPKVLKLTAGTGQEFKKSIEKLMLKLVKALPLAFDNEMYYARAEKLKSQLAQKQ
EAALTELSEEAKQKNISLSLTLQGDYQMVALNGEEPHDEVSFGALTEAERAQFESNINGLEVKLRGIIRQNTEWEEEFSD
TQQEHDEQVAKDVLVHFFKPLKDKYKHQPEVRAFLTGMQSDILSNLDIFLEESEEQLALAYASLEKKMPRRYQVNVIVCQ
GEQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIRPGSLHKANGGVLLMDAIKVLERPYVWDGLKRALRSRKLDLS
SLEREVSLSGTISLAPEPIPLDVKIILFGDHETYQLLQHYDPDFSELFRITADFEDVMDRTDISEAQYARFISSIVHDNN
MLHCDRSAIARIIEYSSREAQDQQKLSLHSANIANLLRESNFCAKAAASQCIEKQHVEQALKNQEQRVSRLHDNIMESFI
NGTTLINTHDKVVGQINALSVISTSDHQFGLPNRITATTAFGKGEVLDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQ
IPLTTYLTFEQSYSGVDGDSASMAECCAIISAISELPLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRSSSQ
GVIIPESNIANLMLRQDIVEAVERGEFHIWAISHVTQAMALLLGKTAATLGGDDGKHAGHYAPECVFGIAQQKLNALRAL
PKAN

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=429, Percent_Identity=38.4615384615385, Blast_Score=292, Evalue=5e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89886; Mature: 89755

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTVPTATPAIPLTSQQLYRKSELKQLNPECQSTAQLTPLDDIVGQERAQQAVEFAMGIK
CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EKGYNIYAIGQNGLGKRTMMLRYLNRHDPIEPSLFDWCYVVNFDDTRSPKVLKLTAGTGQ
HCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCH
EFKKSIEKLMLKLVKALPLAFDNEMYYARAEKLKSQLAQKQEAALTELSEEAKQKNISLS
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTLQGDYQMVALNGEEPHDEVSFGALTEAERAQFESNINGLEVKLRGIIRQNTEWEEEFS
EEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHH
DTQQEHDEQVAKDVLVHFFKPLKDKYKHQPEVRAFLTGMQSDILSNLDIFLEESEEQLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEECCHHHHHH
AYASLEKKMPRRYQVNVIVCQGEQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIR
HHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECCEEEC
PGSLHKANGGVLLMDAIKVLERPYVWDGLKRALRSRKLDLSSLEREVSLSGTISLAPEPI
CCCCEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC
PLDVKIILFGDHETYQLLQHYDPDFSELFRITADFEDVMDRTDISEAQYARFISSIVHDN
CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCC
NMLHCDRSAIARIIEYSSREAQDQQKLSLHSANIANLLRESNFCAKAAASQCIEKQHVEQ
CEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALKNQEQRVSRLHDNIMESFINGTTLINTHDKVVGQINALSVISTSDHQFGLPNRITATT
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEEECCCCCCCCCCCEEEEE
AFGKGEVLDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQIPLTTYLTFEQSYSGVDGD
ECCCCCEEEHHHHHHHCCEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
SASMAECCAIISAISELPLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRSSS
CHHHHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
QGVIIPESNIANLMLRQDIVEAVERGEFHIWAISHVTQAMALLLGKTAATLGGDDGKHAG
CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HYAPECVFGIAQQKLNALRALPKAN
CCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
PTVPTATPAIPLTSQQLYRKSELKQLNPECQSTAQLTPLDDIVGQERAQQAVEFAMGIK
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
EKGYNIYAIGQNGLGKRTMMLRYLNRHDPIEPSLFDWCYVVNFDDTRSPKVLKLTAGTGQ
HCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCH
EFKKSIEKLMLKLVKALPLAFDNEMYYARAEKLKSQLAQKQEAALTELSEEAKQKNISLS
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LTLQGDYQMVALNGEEPHDEVSFGALTEAERAQFESNINGLEVKLRGIIRQNTEWEEEFS
EEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCHHHHHH
DTQQEHDEQVAKDVLVHFFKPLKDKYKHQPEVRAFLTGMQSDILSNLDIFLEESEEQLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHEEECCHHHHHH
AYASLEKKMPRRYQVNVIVCQGEQKFPIVVEESPSYHSLFGYVENATFRGTVFTDFSLIR
HHHHHHHHCCCEEEEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCEEEEEEEECCEEEC
PGSLHKANGGVLLMDAIKVLERPYVWDGLKRALRSRKLDLSSLEREVSLSGTISLAPEPI
CCCCEECCCCEEHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCC
PLDVKIILFGDHETYQLLQHYDPDFSELFRITADFEDVMDRTDISEAQYARFISSIVHDN
CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCC
NMLHCDRSAIARIIEYSSREAQDQQKLSLHSANIANLLRESNFCAKAAASQCIEKQHVEQ
CEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
ALKNQEQRVSRLHDNIMESFINGTTLINTHDKVVGQINALSVISTSDHQFGLPNRITATT
HHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCEEEEEECCCCCCCCCCCEEEEE
AFGKGEVLDIEHRVKLGGRIHSKGVLILTAYLASVLGKTAQIPLTTYLTFEQSYSGVDGD
ECCCCCEEEHHHHHHHCCEECCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCC
SASMAECCAIISAISELPLRQDIAITGSMNQFGEAQPIGGVNEKIEGFFDVCKIKGRSSS
CHHHHHHHHHHHHHHHCCCCCCEEEECCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
QGVIIPESNIANLMLRQDIVEAVERGEFHIWAISHVTQAMALLLGKTAATLGGDDGKHAG
CCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCC
HYAPECVFGIAQQKLNALRALPKAN
CCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]