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The map label for this gene is ycfQ [C]

Identifier: 117919607

GI number: 117919607

Start: 1365177

End: 1365758

Strand: Reverse

Name: ycfQ [C]

Synonym: Shewana3_1158

Alternate gene names: 117919607

Gene position: 1365758-1365177 (Counterclockwise)

Preceding gene: 117919609

Following gene: 117919604

Centisome position: 27.47

GC content: 47.42

Gene sequence:

>582_bases
ATGCGAAACGCAGAGTTTGATAGGGCGCAGGTGCTCAGGGGAGCGATGGCCGCCTTTATGCACAAGGGATACACCAAAAC
CAGCATGCAGGATCTGACCCAAGCAACGGGATTACATCCCGGCTCCATTTATTGCGCTTTTAGTAATAAGCGTGGGTTGC
TCATCGCCGCTATCGAGCAATATCAGCAGGATAGAGACGAGCAGTTCAAGCTTATCTTCTCCAATGGCCGTCCCGTGCTG
GGTAATTTAAAGACCTACTTAGACAATATCGTGGTCGAATGTTTAAGCTGCGATAGCCAGCAAGCTTGTTTGCTCACTAA
AGCCTTAAATGAAATTGCAGAGCAAGATGATGAAATCCAAAACATTATCAGTCAAAACCTCATGCTTTGGCAGTATGCGT
TGACGGCACAATTTGAATTAGCGGACTCCCAAGGGATGTTGCATGGCGAGCTTAACAGTGAGCAGCGGGCGCAATACTTG
ATGATGGGCATTTATGGGTTAAGAACCTTTGCCCATACCCATCCGCAGGCGGAAATCCTACAGCAATTGGCCGATAAGTT
GTTTGATGATGTCTGCAGATAA

Upstream 100 bases:

>100_bases
TCAAGATATTCTTATTTGAACGATCATTCAAGAACATTTTTGAATGTTTGTTCAAAATTAGTTAGAATCAGCACAAGTAT
CGGTGAGAGGTGACATTGCA

Downstream 100 bases:

>100_bases
AAGCGGCGTGCTTAGTTAAGCCGCCCCAAAAACGCAAAAGGACGATAAATCCACTTATCGTCCTTTAAGTTTCAAGTGTT
GCCAGTGCTATTTTTCGTTT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Regulatory Protein TetR; HTH-Type Transcriptional Regulator; TetR-Family Transcriptional Regulator; Regulatory Protein TetR Family Protein; Transcriptional Regulatory Protein; Transcriptional Regulator Tetr Family; Transcriptional Regulator Of TetR Family Protein; Transcriptional Regulator TetR-Family; Transcriptional Regulator Protein; TetR Family Regulatory Protein; TerR Family Transcriptional Regulator

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRNAEFDRAQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFSNKRGLLIAAIEQYQQDRDEQFKLIFSNGRPVL
GNLKTYLDNIVVECLSCDSQQACLLTKALNEIAEQDDEIQNIISQNLMLWQYALTAQFELADSQGMLHGELNSEQRAQYL
MMGIYGLRTFAHTHPQAEILQQLADKLFDDVCR

Sequences:

>Translated_193_residues
MRNAEFDRAQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFSNKRGLLIAAIEQYQQDRDEQFKLIFSNGRPVL
GNLKTYLDNIVVECLSCDSQQACLLTKALNEIAEQDDEIQNIISQNLMLWQYALTAQFELADSQGMLHGELNSEQRAQYL
MMGIYGLRTFAHTHPQAEILQQLADKLFDDVCR
>Mature_193_residues
MRNAEFDRAQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFSNKRGLLIAAIEQYQQDRDEQFKLIFSNGRPVL
GNLKTYLDNIVVECLSCDSQQACLLTKALNEIAEQDDEIQNIISQNLMLWQYALTAQFELADSQGMLHGELNSEQRAQYL
MMGIYGLRTFAHTHPQAEILQQLADKLFDDVCR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21888; Mature: 21888

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNAEFDRAQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFSNKRGLLIAAIEQ
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
YQQDRDEQFKLIFSNGRPVLGNLKTYLDNIVVECLSCDSQQACLLTKALNEIAEQDDEIQ
HHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHH
NIISQNLMLWQYALTAQFELADSQGMLHGELNSEQRAQYLMMGIYGLRTFAHTHPQAEIL
HHHHHHHHHHHHHHHHHEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QQLADKLFDDVCR
HHHHHHHHHHHCC
>Mature Secondary Structure
MRNAEFDRAQVLRGAMAAFMHKGYTKTSMQDLTQATGLHPGSIYCAFSNKRGLLIAAIEQ
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
YQQDRDEQFKLIFSNGRPVLGNLKTYLDNIVVECLSCDSQQACLLTKALNEIAEQDDEIQ
HHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHH
NIISQNLMLWQYALTAQFELADSQGMLHGELNSEQRAQYLMMGIYGLRTFAHTHPQAEIL
HHHHHHHHHHHHHHHHHEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
QQLADKLFDDVCR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA