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The map label for this gene is yhjK [C]

Identifier: 117919483

GI number: 117919483

Start: 1206822

End: 1208846

Strand: Reverse

Name: yhjK [C]

Synonym: Shewana3_1034

Alternate gene names: 117919483

Gene position: 1208846-1206822 (Counterclockwise)

Preceding gene: 117919494

Following gene: 117919470

Centisome position: 24.31

GC content: 48.35

Gene sequence:

>2025_bases
TTGGAAACAAACAAATCTCGTCGTTTTTACAGCGCTTTTTTCGCTATCGCCATCTTCATTGTTGAAATCGCCCTCGTCGT
CTCCACCAAGCAGCAACTCACTACCACTCAACAGGAATTACTCGATTCTGTAGAACAACCCGCCGCCAACGCCGTCTGGG
CTTTAGATGATAATTTGGCAAGGCAAACCCTAGAGGGGGCGATTAAAGTAGAGCATGTGGGCTCTGCGGTGATTGAACTC
GATGACGGCTCGATGTTTGTTTCCGTGAGCAATAATAAGAAAAACAACTCACAAACCTTTATCAGCCTCAGCAATAAACT
CTTTGATGACTTAAAAGAAATCTCACGGCCCTTGTATCGGCCCTTTTACTTTGAAGGCACTCAAAAACAGCAGCTTATCG
GCACGCTAACCATTTTTTACGATACGCAGGAACTGACCAACACCCTCTTTAGCCAGTTACGCTTCAGCTTTTTTGCCACC
TTAGCCCGCGCGCTGTTACTCACCTTAGTGCTGTCTGTCGTATTCCACCGCTTCTTGACACAGCCAATAGCCAGGATCAG
CGAGGCCATTGATAAGATTTCCCCCGATTCGCCCGATGAAAACCTGCTGCCCATGTCCAACGCCCATAAGGATGATGAAT
TAGGTCTAGTGACATCGAAGTTTAACCAGATCCTTATTCAATTCAGTCAGACCCAATCCAAACTGCGTAAAATGGCCACC
CGAGACCCATTAACAGGCCTTCCTAATCGAACCCTATTACTCGAAACCATTGCCGTGACTATCCAGCGCTCACGGGTTCA
TAAAAGCAGTTTTGCTTTGATGTTTATCGACTTAGACCGTTTCAAAAATATCAATGACTCCCTCGGACACGCCCTTGGCG
ATCAATTCCTCGCCCGCATCGCCCGTATTTTGGAACGCGTGGTGGGCGATAAAGGGTCAGTATCACGCCTAGGCGGCGAT
GAATTCGTGATTCTAGCCGACTCAGTTCACTCCCCCGACCAAGCTGCCGACTTTGTCGATAAGCTGTTAGTGCAGCTGAA
TGTGCCGATTCAGCTGAATGAACATGCGATTCACCCGGCGGCATCGATTGGGATTTCCATCTATCCAGAAGATGGCAACA
GCGCCGAAGATCTTATCCGCCATGCCGATATCGCCATGTACAGCGCCAAGGCCGCAGGATCGAATCAATGGGCCTTCTTC
AAACAACAGATGACCGAGCGCGCGGCTGTGCGACTCCGTACCGAAGCATCGCTACATGATGCCTTGAAAAACAATGAATT
TTTGCTCTACTTTCAGCCCAAATTAGATTTACAAACCGGTAAGATCACCGCTTGTGAAGCCCTGATCCGTTGGCAAAAGG
ATGGCCGTTTAATCAGCCCCATCTCCTTTATTCCGGTGGCGGAAGAAACCGGCATTATTATTCCGATTGGACGTTGGGTT
ATCGAGCAAAGCTGCCGCGTGCTACGCGACTGGCAGAAGAAATATAACTATGCGATACCGATTGCTATTAATGTCGCGTC
ACAACAATTTGCCGATGCCAGCTTAGTGTCGGACATTAAGCAAATGGCGCTGCGTTACCAAATTCAACCGGAATTGCTCG
AAATTGAAATCACCGAAACATCGTTGATGAATGACATTGAGCTTGCGATCAACAAGTTAGAACAGCTCAAGTCGGCCGGA
TTTGGTATCGCCGTCGATGACTTTGGTACCGGCTACTCTTCCCTGTCTTACCTGCGGCATTTGCCGATCACGACCATGAA
AATCGACCGCTGCTTCGTATCCGACTTACCAGGAGACAGTGCGATTGCCTCGACCATTTTGATGTTAGGTAAACAGTTAA
ATCTGACTATCGTCGCCGAAGGCATCGAAAACGAGCAGCAACTCGATTGGCTCAAGCGTAACCAATGTCAAATAGGTCAA
GGCTTCTACTTTAGCCAGCCGTTACCACAGGCAGAGTTTGAGGCGCTGTATATTGCCAACCAAACCGCAACCATTAGCAA
TATTGATGGATTTCGTGGCGCCTAA

Upstream 100 bases:

>100_bases
ACGAACAAAGAGTTATGCTGTAACTTAATGTCGCAAGATCCCCATAGCGAAAACAATAATAAAGGATGTGTTGAATGACG
GGTCGCTTTAAATCCCTAAC

Downstream 100 bases:

>100_bases
CGCACCGAAGAGAGAGTGTAAAAGAGTAAATTTGAGGCAATAAAAAAGGAGGCTTAGCCTCCTTTTTTATGTCAGTAAAC
GCGTGATTAACGACGTAAAC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 674; Mature: 674

Protein sequence:

>674_residues
METNKSRRFYSAFFAIAIFIVEIALVVSTKQQLTTTQQELLDSVEQPAANAVWALDDNLARQTLEGAIKVEHVGSAVIEL
DDGSMFVSVSNNKKNNSQTFISLSNKLFDDLKEISRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFAT
LARALLLTLVLSVVFHRFLTQPIARISEAIDKISPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQSKLRKMAT
RDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRFKNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGD
EFVILADSVHSPDQAADFVDKLLVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFF
KQQMTERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITACEALIRWQKDGRLISPISFIPVAEETGIIIPIGRWV
IEQSCRVLRDWQKKYNYAIPIAINVASQQFADASLVSDIKQMALRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAG
FGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVSDLPGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQ
GFYFSQPLPQAEFEALYIANQTATISNIDGFRGA

Sequences:

>Translated_674_residues
METNKSRRFYSAFFAIAIFIVEIALVVSTKQQLTTTQQELLDSVEQPAANAVWALDDNLARQTLEGAIKVEHVGSAVIEL
DDGSMFVSVSNNKKNNSQTFISLSNKLFDDLKEISRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFAT
LARALLLTLVLSVVFHRFLTQPIARISEAIDKISPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQSKLRKMAT
RDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRFKNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGD
EFVILADSVHSPDQAADFVDKLLVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFF
KQQMTERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITACEALIRWQKDGRLISPISFIPVAEETGIIIPIGRWV
IEQSCRVLRDWQKKYNYAIPIAINVASQQFADASLVSDIKQMALRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAG
FGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVSDLPGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQ
GFYFSQPLPQAEFEALYIANQTATISNIDGFRGA
>Mature_674_residues
METNKSRRFYSAFFAIAIFIVEIALVVSTKQQLTTTQQELLDSVEQPAANAVWALDDNLARQTLEGAIKVEHVGSAVIEL
DDGSMFVSVSNNKKNNSQTFISLSNKLFDDLKEISRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFAT
LARALLLTLVLSVVFHRFLTQPIARISEAIDKISPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQSKLRKMAT
RDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRFKNINDSLGHALGDQFLARIARILERVVGDKGSVSRLGGD
EFVILADSVHSPDQAADFVDKLLVQLNVPIQLNEHAIHPAASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFF
KQQMTERAAVRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITACEALIRWQKDGRLISPISFIPVAEETGIIIPIGRWV
IEQSCRVLRDWQKKYNYAIPIAINVASQQFADASLVSDIKQMALRYQIQPELLEIEITETSLMNDIELAINKLEQLKSAG
FGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVSDLPGDSAIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQ
GFYFSQPLPQAEFEALYIANQTATISNIDGFRGA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=563, Percent_Identity=31.4387211367673, Blast_Score=299, Evalue=5e-82,
Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=34.7222222222222, Blast_Score=292, Evalue=6e-80,
Organism=Escherichia coli, GI87081921, Length=446, Percent_Identity=32.7354260089686, Blast_Score=233, Evalue=4e-62,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=36.2869198312236, Blast_Score=156, Evalue=5e-39,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=33.0645161290323, Blast_Score=153, Evalue=3e-38,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=35.2941176470588, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=31.9066147859922, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=31.7269076305221, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1786507, Length=272, Percent_Identity=29.4117647058824, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788849, Length=260, Percent_Identity=30.7692307692308, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1787055, Length=237, Percent_Identity=29.1139240506329, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=28.7449392712551, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1788381, Length=364, Percent_Identity=26.0989010989011, Blast_Score=97, Evalue=5e-21,
Organism=Escherichia coli, GI1788956, Length=242, Percent_Identity=31.8181818181818, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=29.5698924731183, Blast_Score=86, Evalue=9e-18,
Organism=Escherichia coli, GI1787802, Length=200, Percent_Identity=30, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=31.5151515151515, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=28.9772727272727, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787816, Length=248, Percent_Identity=29.4354838709677, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=31.3253012048193, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787056, Length=125, Percent_Identity=33.6, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=174, Percent_Identity=31.0344827586207, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI145693134, Length=170, Percent_Identity=29.4117647058824, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789650, Length=440, Percent_Identity=21.1363636363636, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75466; Mature: 75466

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METNKSRRFYSAFFAIAIFIVEIALVVSTKQQLTTTQQELLDSVEQPAANAVWALDDNLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
RQTLEGAIKVEHVGSAVIELDDGSMFVSVSNNKKNNSQTFISLSNKLFDDLKEISRPLYR
HHHHHCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCC
PFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLTLVLSVVFHRFLT
CEEECCCCHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPIARISEAIDKISPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQSKLRKMAT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRFKNINDSLGHALGDQFLARI
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHH
ARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNVPIQLNEHAIHPA
HHHHHHHHCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH
ASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERAAVRLRTEASLHD
HHCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALKNNEFLLYFQPKLDLQTGKITACEALIRWQKDGRLISPISFIPVAEETGIIIPIGRWV
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCEEEEECCCCCCEEEECHHHH
IEQSCRVLRDWQKKYNYAIPIAINVASQQFADASLVSDIKQMALRYQIQPELLEIEITET
HHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH
SLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVSDLPGDS
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCCH
AIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQGFYFSQPLPQAEFEALYIAN
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEC
QTATISNIDGFRGA
CCCEECCCCCCCCC
>Mature Secondary Structure
METNKSRRFYSAFFAIAIFIVEIALVVSTKQQLTTTQQELLDSVEQPAANAVWALDDNLA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCEEEEECHHHH
RQTLEGAIKVEHVGSAVIELDDGSMFVSVSNNKKNNSQTFISLSNKLFDDLKEISRPLYR
HHHHHCCEEEEECCCEEEEECCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHCC
PFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLTLVLSVVFHRFLT
CEEECCCCHHHHEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPIARISEAIDKISPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFSQTQSKLRKMAT
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RDPLTGLPNRTLLLETIAVTIQRSRVHKSSFALMFIDLDRFKNINDSLGHALGDQFLARI
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHH
ARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNVPIQLNEHAIHPA
HHHHHHHHCCCCCEECCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCH
ASIGISIYPEDGNSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERAAVRLRTEASLHD
HHCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALKNNEFLLYFQPKLDLQTGKITACEALIRWQKDGRLISPISFIPVAEETGIIIPIGRWV
HHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEECCEEEEECCCCCCEEEECHHHH
IEQSCRVLRDWQKKYNYAIPIAINVASQQFADASLVSDIKQMALRYQIQPELLEIEITET
HHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHH
SLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPITTMKIDRCFVSDLPGDS
HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCCH
AIASTILMLGKQLNLTIVAEGIENEQQLDWLKRNQCQIGQGFYFSQPLPQAEFEALYIAN
HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEECCCCCCCCCCCEEEEEC
QTATISNIDGFRGA
CCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]