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The map label for this gene is yhbY [H]

Identifier: 117919470

GI number: 117919470

Start: 1193039

End: 1193338

Strand: Reverse

Name: yhbY [H]

Synonym: Shewana3_1021

Alternate gene names: 117919470

Gene position: 1193338-1193039 (Counterclockwise)

Preceding gene: 117919483

Following gene: 117919462

Centisome position: 24.0

GC content: 40.67

Gene sequence:

>300_bases
ATGAACTTAACAACCAAACAAAAACAGCATTTAAAAGGTCTGGCGCACAATTTAAAGCCAGTGGTGCTGCTTGGTGCCAA
TGGATTGACTGAAGGTGTACTCGCTGAAATTGAAAGCGCACTCGCTTATCATGAACTGATTAAAGTGAAAGTAGCCTCTA
CCGATAGAGAGCTAAAAAATGCCATCGTTGATGCCATAGTACGTGAAACTCAATCTGCAAAAGTGCAACTTATTGGTCAT
ATTCTGGTGATTTATCGTCAATCGCCTGAAATGAAAATTGCCCTGCCAAGAGCTAAGTAA

Upstream 100 bases:

>100_bases
TACCTGACATTTAAAATCCGCAACAATTGAGAGTTACACAAGGGCTATATAAGGGTAGAATAGCGGTTTTTCAACAGTAA
CTCAGCAAAAGTTGGTAGAA

Downstream 100 bases:

>100_bases
TTTTCCAGCCTTAAACAAAACGGCCACTCAAGCGAGTGGCCGTTTTGTTTTCAGCACTTAAGGCGTGTCGGTGATGACTT
GCACTTTATAATGCTCTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MNLTTKQKQHLKGLAHNLKPVVLLGANGLTEGVLAEIESALAYHELIKVKVASTDRELKNAIVDAIVRETQSAKVQLIGH
ILVIYRQSPEMKIALPRAK

Sequences:

>Translated_99_residues
MNLTTKQKQHLKGLAHNLKPVVLLGANGLTEGVLAEIESALAYHELIKVKVASTDRELKNAIVDAIVRETQSAKVQLIGH
ILVIYRQSPEMKIALPRAK
>Mature_99_residues
MNLTTKQKQHLKGLAHNLKPVVLLGANGLTEGVLAEIESALAYHELIKVKVASTDRELKNAIVDAIVRETQSAKVQLIGH
ILVIYRQSPEMKIALPRAK

Specific function: Unknown

COG id: COG1534

COG function: function code J; Predicted RNA-binding protein containing KH domain, possibly ribosomal protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CRM domain [H]

Homologues:

Organism=Escherichia coli, GI1789570, Length=97, Percent_Identity=73.1958762886598, Blast_Score=142, Evalue=5e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001890
- InterPro:   IPR017924
- ProDom:   PD010559 [H]

Pfam domain/function: PF01985 CRS1_YhbY [H]

EC number: NA

Molecular weight: Translated: 10887; Mature: 10887

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS01301 UPF0044

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTTKQKQHLKGLAHNLKPVVLLGANGLTEGVLAEIESALAYHELIKVKVASTDRELKN
CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AIVDAIVRETQSAKVQLIGHILVIYRQSPEMKIALPRAK
HHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEECCCCC
>Mature Secondary Structure
MNLTTKQKQHLKGLAHNLKPVVLLGANGLTEGVLAEIESALAYHELIKVKVASTDRELKN
CCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
AIVDAIVRETQSAKVQLIGHILVIYRQSPEMKIALPRAK
HHHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]