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The map label for this gene is ybeY [C]

Identifier: 117919455

GI number: 117919455

Start: 1176731

End: 1177192

Strand: Reverse

Name: ybeY [C]

Synonym: Shewana3_1006

Alternate gene names: 117919455

Gene position: 1177192-1176731 (Counterclockwise)

Preceding gene: 117919456

Following gene: 117919454

Centisome position: 23.68

GC content: 46.1

Gene sequence:

>462_bases
ATGAGTCTTGATTTAGCCTTAGATGTGCAATACGCCACGGCGAGTGACTATCTGCCCAGTGAAGATCAGTTTGCTCTTTG
GGTAAAAACTGCCATTGGTAACAGCATGGAACAGGCGGAGCTGACCATTCGCATCGTCGATGCCCGTGAAAGCCAAATGC
TAAACAGCACCTACAGAGGCAAAGACAAACCGACCAATGTGTTGTCGTTTCCCTTTGAAGCACCGCCAGAAATTGAACTT
CCACTGCTTGGAGATCTTGTCATTTGTGCCGCAGTCGTTGAAAATGAAGCGCGTGAACAAGATAAAACCCTAGAAGCCCA
TTGGGCACACATGGTTGTACATGGTTGCCTGCATCTGCTAGGTTATGATCACATTGAAGACGAAGAAGCCGAAGAGATGG
AGTCGTTAGAGACTCAACTCATTGAAAGCTTAGGTTTTACTGACCCATATAAGGAACAATAA

Upstream 100 bases:

>100_bases
TATGATGCTTACGATCGTAAGGAGCAGGCATTAAAGGCTGAAAAAGAGCGCCGCGACTATCAACAAGCGCATCCACAAAC
GCAACAGGAAGTCTTAAAGC

Downstream 100 bases:

>100_bases
TTAACCACGGTGCACAGCATCAAGGTTAATGAGAAAACTATGAGTGACGATATCCCCCCGAGTACGAGCGCCCAAAAGAA
AGGCTGGTTTGACAGAGTAA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSLDLALDVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRGKDKPTNVLSFPFEAPPEIEL
PLLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ

Sequences:

>Translated_153_residues
MSLDLALDVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRGKDKPTNVLSFPFEAPPEIEL
PLLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ
>Mature_152_residues
SLDLALDVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRGKDKPTNVLSFPFEAPPEIELP
LLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLLGYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=145, Percent_Identity=65.5172413793103, Blast_Score=177, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 17254; Mature: 17123

Theoretical pI: Translated: 3.96; Mature: 3.96

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDLALDVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRG
CCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEEEECCHHHHHHHHHHCC
KDKPTNVLSFPFEAPPEIELPLLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SLDLALDVQYATASDYLPSEDQFALWVKTAIGNSMEQAELTIRIVDARESQMLNSTYRG
CCCEEEEEEECCCCCCCCCCCCEEEEEEHHHCCCCCCCEEEEEEECCHHHHHHHHHHCC
KDKPTNVLSFPFEAPPEIELPLLGDLVICAAVVENEAREQDKTLEAHWAHMVVHGCLHLL
CCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYDHIEDEEAEEMESLETQLIESLGFTDPYKEQ
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]