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The map label for this gene is rlpA [C]

Identifier: 117919441

GI number: 117919441

Start: 1162319

End: 1163161

Strand: Reverse

Name: rlpA [C]

Synonym: Shewana3_0992

Alternate gene names: 117919441

Gene position: 1163161-1162319 (Counterclockwise)

Preceding gene: 117919442

Following gene: 117919440

Centisome position: 23.39

GC content: 49.35

Gene sequence:

>843_bases
ATGACGCTAAAAAATAACCTTTTACCGCTCTTGATGCTCGGCTGCTGTTTTGTGCTCGCGGCCTGCTCGAGTTCTAATTC
TGGCTCTGCCAGCGAAAAGAACAAGAACATGGATCCCAACAAGGGCCGCTACGCGCTAAAAAACGATAAGATGCCCATCA
ATCCACCCAATGTGGACCATGTGCCAAACGCGACCCCAAAATACGAGCCTTACAGCCGCCGCGGTAATAAACCTTATACG
GTTTATGGAGAGTCCTATACGGTGTTAGATTCGGGCCAAGGCTTTTCCGAAACGGGACGCGCCTCATGGTACGGCGAGAA
ATTCCACGGCTATGAGACATCGAACGGCGAGCCCTACGACATGTATGGCATGTCAGGTGCCCACAAGACCTTGCCCCTGC
CAAGCTATGCCCGCGTCACTAACTTAGATAACAATAAGCAGGTGATTATTCGGATTAACGATCGCGGCCCTTTCCATTCG
GATAGGATTTTAGACTTATCCTACGCCGCCGCTTATAAGCTGGGCATGCTAGGCACTGGCACCGCACGGATTAAGCTAGA
TGTGATCTATATTGGCACTCAGGCTGCGACACAGTCCGCCATCGCCAATATCCAATCCTCAGGCAATCACTACATACAAT
TGGTGGCTTCTAAGGATCAGCATAGGCTGAACAAAATGGCGAAGGATCTGGAGAAGAAATATCAGGTCAAGACCCGTGTA
CAACCGGCAAACAATATGTATAGACTACAGCTCGGTCCAATTGGTCAAACCGAACTAGCCGACCGATTACTCAATAAAGT
GAAACAAGACGGTTACCCCGAAGGCTATATGGTTTTAGAGTAG

Upstream 100 bases:

>100_bases
TGGCTAGGACTCAATAACTTTTATGTGATCACCCGTTATAACCGTAGCCCTTTGTATTCCATGGCCGTTTATCAATTTAG
CCAACAACTGAAGCAACAAC

Downstream 100 bases:

>100_bases
TGACCGCTCACTATAAGATGTAAATTTAGCTTAAAAATACCCCAGATGAAGGAACCTTCACTGAAAACCTTTGTCGAAGG
GTGGTATACTCGCGAAACTA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MTLKNNLLPLLMLGCCFVLAACSSSNSGSASEKNKNMDPNKGRYALKNDKMPINPPNVDHVPNATPKYEPYSRRGNKPYT
VYGESYTVLDSGQGFSETGRASWYGEKFHGYETSNGEPYDMYGMSGAHKTLPLPSYARVTNLDNNKQVIIRINDRGPFHS
DRILDLSYAAAYKLGMLGTGTARIKLDVIYIGTQAATQSAIANIQSSGNHYIQLVASKDQHRLNKMAKDLEKKYQVKTRV
QPANNMYRLQLGPIGQTELADRLLNKVKQDGYPEGYMVLE

Sequences:

>Translated_280_residues
MTLKNNLLPLLMLGCCFVLAACSSSNSGSASEKNKNMDPNKGRYALKNDKMPINPPNVDHVPNATPKYEPYSRRGNKPYT
VYGESYTVLDSGQGFSETGRASWYGEKFHGYETSNGEPYDMYGMSGAHKTLPLPSYARVTNLDNNKQVIIRINDRGPFHS
DRILDLSYAAAYKLGMLGTGTARIKLDVIYIGTQAATQSAIANIQSSGNHYIQLVASKDQHRLNKMAKDLEKKYQVKTRV
QPANNMYRLQLGPIGQTELADRLLNKVKQDGYPEGYMVLE
>Mature_279_residues
TLKNNLLPLLMLGCCFVLAACSSSNSGSASEKNKNMDPNKGRYALKNDKMPINPPNVDHVPNATPKYEPYSRRGNKPYTV
YGESYTVLDSGQGFSETGRASWYGEKFHGYETSNGEPYDMYGMSGAHKTLPLPSYARVTNLDNNKQVIIRINDRGPFHSD
RILDLSYAAAYKLGMLGTGTARIKLDVIYIGTQAATQSAIANIQSSGNHYIQLVASKDQHRLNKMAKDLEKKYQVKTRVQ
PANNMYRLQLGPIGQTELADRLLNKVKQDGYPEGYMVLE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=184, Percent_Identity=33.695652173913, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 31173; Mature: 31042

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKNNLLPLLMLGCCFVLAACSSSNSGSASEKNKNMDPNKGRYALKNDKMPINPPNVDH
CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
VPNATPKYEPYSRRGNKPYTVYGESYTVLDSGQGFSETGRASWYGEKFHGYETSNGEPYD
CCCCCCCCCCHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCHHCCEECCCCCCEE
MYGMSGAHKTLPLPSYARVTNLDNNKQVIIRINDRGPFHSDRILDLSYAAAYKLGMLGTG
ECCCCCCCCCCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCC
TARIKLDVIYIGTQAATQSAIANIQSSGNHYIQLVASKDQHRLNKMAKDLEKKYQVKTRV
CEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEE
QPANNMYRLQLGPIGQTELADRLLNKVKQDGYPEGYMVLE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC
>Mature Secondary Structure 
TLKNNLLPLLMLGCCFVLAACSSSNSGSASEKNKNMDPNKGRYALKNDKMPINPPNVDH
CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
VPNATPKYEPYSRRGNKPYTVYGESYTVLDSGQGFSETGRASWYGEKFHGYETSNGEPYD
CCCCCCCCCCHHHCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCHHCCEECCCCCCEE
MYGMSGAHKTLPLPSYARVTNLDNNKQVIIRINDRGPFHSDRILDLSYAAAYKLGMLGTG
ECCCCCCCCCCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHCCCCCC
TARIKLDVIYIGTQAATQSAIANIQSSGNHYIQLVASKDQHRLNKMAKDLEKKYQVKTRV
CEEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHEEE
QPANNMYRLQLGPIGQTELADRLLNKVKQDGYPEGYMVLE
CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]