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The map label for this gene is ybeD [C]

Identifier: 117919439

GI number: 117919439

Start: 1160611

End: 1160877

Strand: Reverse

Name: ybeD [C]

Synonym: Shewana3_0990

Alternate gene names: 117919439

Gene position: 1160877-1160611 (Counterclockwise)

Preceding gene: 117919440

Following gene: 117919438

Centisome position: 23.35

GC content: 51.31

Gene sequence:

>267_bases
ATGTTAAACACGAAATTTGATGAACTCATGGAGTTCCCCTGCGCCTTCCCCTTCAAAGTGGTTGGCGATGCCCACGAAGC
CCTGACCGACAGAGTCGTTGCCGTAGTGCAAAGACACGCCCCAGGTGATTATTCACCTACGGTTAAGGCCTCAAGCAAAG
GTAGCTACTACTCTGTGACCATCCGCGTCACAGTGACCAGCAAAGATCATATTGAGACTCTGTACACTGAGCTTGCCGGT
ATCGAAGGCGTACGCCGCGTACTATAA

Upstream 100 bases:

>100_bases
CACCTTCGGGTGGCTTAGTTGTTTTTGGGGGAGTATCGCCCTTGAATCGGGTATAATCGTCACCATATAGTTCCCATTAA
AATGGTTATAGAGCACGACT

Downstream 100 bases:

>100_bases
GTATTCCTCAAGGCCATGAAATGTGATCTGTCTTACATTTATGGTCAAGAGGCGTATAATAGCGCCACTCAATTCTAGGG
GAGAGGTTGCCCTTGCAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MLNTKFDELMEFPCAFPFKVVGDAHEALTDRVVAVVQRHAPGDYSPTVKASSKGSYYSVTIRVTVTSKDHIETLYTELAG
IEGVRRVL

Sequences:

>Translated_88_residues
MLNTKFDELMEFPCAFPFKVVGDAHEALTDRVVAVVQRHAPGDYSPTVKASSKGSYYSVTIRVTVTSKDHIETLYTELAG
IEGVRRVL
>Mature_88_residues
MLNTKFDELMEFPCAFPFKVVGDAHEALTDRVVAVVQRHAPGDYSPTVKASSKGSYYSVTIRVTVTSKDHIETLYTELAG
IEGVRRVL

Specific function: Unknown

COG id: COG2921

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0250 family [H]

Homologues:

Organism=Escherichia coli, GI1786850, Length=87, Percent_Identity=57.4712643678161, Blast_Score=105, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007454 [H]

Pfam domain/function: PF04359 DUF493 [H]

EC number: NA

Molecular weight: Translated: 9761; Mature: 9761

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNTKFDELMEFPCAFPFKVVGDAHEALTDRVVAVVQRHAPGDYSPTVKASSKGSYYSVT
CCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEE
IRVTVTSKDHIETLYTELAGIEGVRRVL
EEEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNTKFDELMEFPCAFPFKVVGDAHEALTDRVVAVVQRHAPGDYSPTVKASSKGSYYSVT
CCCCCHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEEE
IRVTVTSKDHIETLYTELAGIEGVRRVL
EEEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA