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The map label for this gene is cydA [H]

Identifier: 117919377

GI number: 117919377

Start: 1084202

End: 1085542

Strand: Reverse

Name: cydA [H]

Synonym: Shewana3_0928

Alternate gene names: 117919377

Gene position: 1085542-1084202 (Counterclockwise)

Preceding gene: 117919380

Following gene: 117919376

Centisome position: 21.83

GC content: 49.29

Gene sequence:

>1341_bases
ATGTTTGATTTTGATGCCACCGTACTCGCGAGGATCCAATTCGCTTTTACCGTTTCTTTTCACATTATCTTTCCCGCAAT
CACTATTGGGTTAGCCACCTATTTAGCCGTGTTAGAAGGACTCTGGTTGAAGACAAACAATCAGATTTATCAGCAGCTTT
ATCAATTCTGGGTCAAGATTTTTGCCATTAACTTCGGCATGGGCGTGGTCTCAGGCATAGTGATGGCATACCAATTTGGC
ACCCACTGGAGTGGTTTTTCGGCCTTTGCGGGCAGCGTAACCGGCCCTCTGCTCACCTATGAAGTGCTGACAGCATTTTT
CCTCGAGGCGGGATTTCTCGGAGTGATGCTGTTTGGGCAAAATAAGGTTGGCAAAAAGCTGCACTTTTTTGCCACTTGCA
TGGTGGCCACGGGCACTGTGATTTCAACCTTTTGGATCCTCGCCTCCAATAGTTGGATGCACACACCTCAGGGGGTTGAA
ATCATTGATAACCGAGTCGTCCCCATCGACTGGTGGCAAATCGTGTTTAATCCTTCATTTCCCTACCGTTTAACCCATAT
GACGGTTGCCGCCTTTCTCTCCTCGGCCTTCTTTGTTGGCGCCTCCGCCGCGTGGCATTTGCTCAAAGGAAACGATACTC
CCGCGATTCGTAAAATGCTTTCCATGGCCATGTGGATGGCATTGATTGTTGCACCGCTGCAAGCAGTGATTGGTGACTTT
CACGGGCTAAATACCCTTGAGTATCAACCAGTAAAAATCGCGGCGATGGAAGGCCACTGGCGTAATGAAGGGGATGAACC
TACGCCGCTCATCTTATTCGCGATGCCCGATATGGATAAGCAAACCAATCATTTCAGTTTGGAAATTCCAGGATTAGCCA
GTCTGATTTTAAAACACGATATAACCAAGCAAGTGCCAGCACTCACTGAGTTTCCTGCCGAGGATTGGCCCAATGTGTCC
TTAGTGTTTTGGAGTTTTAGGGTGATGGTGGGCTTAGGCGTGCTGATGATTTTGGCGGGCGTCTGGAGCCTCTACCTTAG
ACGCAAGCAGACGCTATACAGCAATCGCCTGTTCCTGCGCTTGGTACTCTTGTTAGGTCCCGCGGGATTAATCGCGACCC
TCGCGGGCTGGTTTACCACTGAACTTGGCCGCCAACCTTGGGTTATCCAAGGGTTAATGCGCACTCAAGATGCGGTTTCG
TCCCACAGTGTGACCCATTTAAGCATCAGCCTGATGATGTTTGTTATCTGTTACTTCGGCATTTTTGGCGTGGGTTATCG
CTACATGATGCGGCTCATCAGTAAAGGGCCGATAGCGCAAGGGATTGAGCACCATGGATAA

Upstream 100 bases:

>100_bases
TACCCCATGGTCTAATAGCGCACAAGCCATCAGCGGTACGAATCCGAGGCGCTGAGCGACTTGCATTTACACATCCCTTT
GCTGCACGCCTGAGGACACT

Downstream 100 bases:

>100_bases
CAAATCCAGTTTTTTAGCATATCAATTGATTAATCAACCCATTTAAAGGCACAACATGGAATTCGACTTACCCCTGATTT
GGTTTGGGATCATCATCTTT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKIFAINFGMGVVSGIVMAYQFG
THWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQNKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVE
IIDNRVVPIDWWQIVFNPSFPYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHDITKQVPALTEFPAEDWPNVS
LVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLRLVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVS
SHSVTHLSISLMMFVICYFGIFGVGYRYMMRLISKGPIAQGIEHHG

Sequences:

>Translated_446_residues
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKIFAINFGMGVVSGIVMAYQFG
THWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQNKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVE
IIDNRVVPIDWWQIVFNPSFPYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHDITKQVPALTEFPAEDWPNVS
LVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLRLVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVS
SHSVTHLSISLMMFVICYFGIFGVGYRYMMRLISKGPIAQGIEHHG
>Mature_446_residues
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKIFAINFGMGVVSGIVMAYQFG
THWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQNKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVE
IIDNRVVPIDWWQIVFNPSFPYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHDITKQVPALTEFPAEDWPNVS
LVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLRLVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVS
SHSVTHLSISLMMFVICYFGIFGVGYRYMMRLISKGPIAQGIEHHG

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=510, Percent_Identity=32.7450980392157, Blast_Score=244, Evalue=9e-66,
Organism=Escherichia coli, GI87081779, Length=308, Percent_Identity=33.4415584415584, Blast_Score=204, Evalue=1e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 49974; Mature: 49974

Theoretical pI: Translated: 8.61; Mature: 8.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHH
FAINFGMGVVSGIVMAYQFGTHWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEECC
NKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVEIIDNRVVPIDWWQIVFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCEECEEEEEEEEECCCC
PYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
CCHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHD
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHH
ITKQVPALTEFPAEDWPNVSLVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLR
HHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVSSHSVTHLSISLMMFVICYFG
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IFGVGYRYMMRLISKGPIAQGIEHHG
HHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MFDFDATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCHHHHHHHHHHHHHH
FAINFGMGVVSGIVMAYQFGTHWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQ
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEECC
NKVGKKLHFFATCMVATGTVISTFWILASNSWMHTPQGVEIIDNRVVPIDWWQIVFNPSF
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCEECEEEEEEEEECCCC
PYRLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDF
CCHHHHHHHHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSLEIPGLASLILKHD
CCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHH
ITKQVPALTEFPAEDWPNVSLVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRLFLR
HHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVSSHSVTHLSISLMMFVICYFG
HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
IFGVGYRYMMRLISKGPIAQGIEHHG
HHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]