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The map label for this gene is appB [H]

Identifier: 117919376

GI number: 117919376

Start: 1083139

End: 1084146

Strand: Reverse

Name: appB [H]

Synonym: Shewana3_0927

Alternate gene names: 117919376

Gene position: 1084146-1083139 (Counterclockwise)

Preceding gene: 117919377

Following gene: 117919375

Centisome position: 21.8

GC content: 50.0

Gene sequence:

>1008_bases
ATGGAATTCGACTTACCCCTGATTTGGTTTGGGATCATCATCTTTGCCACACTCATGTATATAGTGATGGATGGCTTCGA
TCTTGGCATCGGCATCTTATTTCCCTTCATCCATGATGAGGACGATAGGGATGTAATGGTCAACACCGTCGCGCCAGTGT
GGGATGGAAACGAGACTTGGCTGGTACTCGGTGGTGCTAGCCTGCTCGGCGCCTTTCCTCTCGCCTACGCCATAGTGCTC
GAAGCCCTGACCATTCCCTTACTGATCATGCTACTCGCGTTGATTTTTCGCGGCGTCGCCTTTGAATTTAGGTTTAAATC
CAGCGCAGAGACCAAACCCTTTTGGGACAAAGCCTTTATGTTCGGCTCGATTATTGCCACCTTTGCCCAAGGCGTAGTGC
TCGGCGCATTTATCTCGGGCATTTCGGTAGATGGACAAAGGTTCAGCGGTAGCAGCTTCGATTGGTTATCGCCCTTCTCA
CTCTTCTGTGGTTTTGGGCTGATGCTGGCCTACGCGCTGCTTGGCGCAACTTGGTTAGTGAAGAAATGCACAGGCACACT
CAAGACGACCATGCAGCAACTTGCTAAAGTCCTCGCTGTTTGCCTGCTGATGACCATAGGAATCGTCAGTTTATGGACAC
CCTTCGTACAACCCAATATTGCCCTGCGCTGGTTTAGTCTGCCGAATTTATTCTATTTTGCGCCTGTACCTCTGCTGGTA
TTACTCTGCACTAAGGCACTTATTCGCGCTTTAAATACTGAGGATGACTATCGCCCCTTCTTGCTAACGCTCGCGTTAAT
CTTCTTAGGCTTTAGTGGCTTGGGCATCAGCATCTGGCCACATATTATTCCGCCAACGATCAGCCTATGGCAGGCGGCTG
CACCTGAGAGCAGCTTAGGTTTTATGCTCATCGGCGCACTGATGATTATCCCCTTGATCTTGGCCTACACCTTTTGGAGC
TATTACGTGTTTCGCGGCAAAGTCACCAAGGATGCGGGTTATCACTAA

Upstream 100 bases:

>100_bases
ATCAGTAAAGGGCCGATAGCGCAAGGGATTGAGCACCATGGATAACAAATCCAGTTTTTTAGCATATCAATTGATTAATC
AACCCATTTAAAGGCACAAC

Downstream 100 bases:

>100_bases
AACGACTTCATGCAGCCGATATCGACTCGGCTGCCAGCAACACAACTTAGGAGATTGCAATGACGACTCAGACTTCATCG
CTCCCCAAACGGCTCGGCTG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MEFDLPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETWLVLGGASLLGAFPLAYAIVL
EALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFMFGSIIATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFS
LFCGFGLMLAYALLGATWLVKKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV
LLCTKALIRALNTEDDYRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESSLGFMLIGALMIIPLILAYTFWS
YYVFRGKVTKDAGYH

Sequences:

>Translated_335_residues
MEFDLPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETWLVLGGASLLGAFPLAYAIVL
EALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFMFGSIIATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFS
LFCGFGLMLAYALLGATWLVKKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV
LLCTKALIRALNTEDDYRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESSLGFMLIGALMIIPLILAYTFWS
YYVFRGKVTKDAGYH
>Mature_335_residues
MEFDLPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETWLVLGGASLLGAFPLAYAIVL
EALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFMFGSIIATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFS
LFCGFGLMLAYALLGATWLVKKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV
LLCTKALIRALNTEDDYRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESSLGFMLIGALMIIPLILAYTFWS
YYVFRGKVTKDAGYH

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=364, Percent_Identity=26.9230769230769, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1786954, Length=366, Percent_Identity=26.775956284153, Blast_Score=134, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37138; Mature: 37138

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFDLPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETW
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEE
LVLGGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFM
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHH
FGSIIATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFSLFCGFGLMLAYALLGATWLV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
LLCTKALIRALNTEDDYRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESSLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHCCCCCCHH
FMLIGALMIIPLILAYTFWSYYVFRGKVTKDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEFDLPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDEDDRDVMVNTVAPVWDGNETW
CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEE
LVLGGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFKSSAETKPFWDKAFM
EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHH
FGSIIATFAQGVVLGAFISGISVDGQRFSGSSFDWLSPFSLFCGFGLMLAYALLGATWLV
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNIALRWFSLPNLFYFAPVPLLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
LLCTKALIRALNTEDDYRPFLLTLALIFLGFSGLGISIWPHIIPPTISLWQAAAPESSLG
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHCCCCCCHH
FMLIGALMIIPLILAYTFWSYYVFRGKVTKDAGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]