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The map label for this gene is yfbS [C]

Identifier: 117919317

GI number: 117919317

Start: 1007803

End: 1009527

Strand: Direct

Name: yfbS [C]

Synonym: Shewana3_0865

Alternate gene names: 117919317

Gene position: 1007803-1009527 (Clockwise)

Preceding gene: 117919316

Following gene: 117919318

Centisome position: 20.27

GC content: 50.61

Gene sequence:

>1725_bases
GTGAGTGACTTGTGGCTATTAGCTATAGTGCTGTTTGGATTAGTGGCTGGCTTAATCGCCGGCCGCATTAATCCCGCTGT
GTTGTTTTTATTTGCTTTTTTACTCTGTTACCTCCTAGGAATGGTATCACTCGACACGGCGCTCACTAGCTTTACCAACA
CAGGTTTAGTCACTCTGGTGTTATTGGTACTGGCGGCGACGGCGCTGGAAAAAACCTCACTGCTGGGCAAGTTAAGCCAA
GTGATTGGCAATAATTCGCTTGCGGTGACTATGGCAAAATTGGGATTTTCGACGGCGCTGCTGTCCTCTTTTACCAATAA
CACCGCCGTCGTCGCATCTTTGATTGGGGTGGTGCGCCGCAATCAGGCCCATGCTCCAGCTAAGTTGTTGTTGCCACTTA
ACTATGCGGCGATTCTGGGCGGTACGCTGACCTTAATTGGTACTTCCACTAACCTTATCGTCAACTCGTTTGTCGAGAAT
GCGGGCTTGCCTGCGCTGGGGTTCTTTGAGTTCACCCCAGTGGCCATGCTGATTGTGCTGTTAGGCATAGTGCTGCTGAT
TGTGCTGGCTAATACCTTACCCGACAGGCGAGAGGATTCGACCGAAGAGACACTGCCCTATCTGCTGGAAGCCCACGTGG
CCAAAGGCTCGTCTTTAGTTGGGCGTAGCGTGGTGGATAACAAATTAAGAGCCCTGAAAAAGCTCTATTTAGTTGAGCTT
GAGCGCAGCGGTATTTGTATTTGTCCGGTTCCACCACAGTTAGTGTTACAGGCGGACGATGTGCTGCGTTTCAGTGGCGC
GGTGGAGTCGGTGGAGCTGTTGCATCAATTCGATGGCCTAGATTGGTTTGGCAAACATCAAGCAAAAGGGCAAAACCTAG
TCGAAGCCGTGTTGGCCCCTTCATCGAGCCTAGTGGGTAGTACCTTAAAGGAGTCTCGCTTTCGCGAACAGTTTGATGCG
GCTGTAATGGCGATTCGTCGTGGTCATCATCCGCTAAAAGGTGGTTTGGGCGATATCGTATTACAACCGGGCGATGTGTT
ACTGCTGACGCCGGGGGATGGTTTTAGCACCAATGCTAAGCTGAGTACTGAATTTGCCGCCGTCAGCGGACTCGATTTAA
ATGTGCGCTTAGACAGCCGCCGCAGCCGTTTTGTATTAAGCAGTTTTGTGATCACCATTGTGCTTAGTCTGACCGGCGTA
TTACCGCTGGCCAAGGGCTTGGTGCTATTGCTGCTGAGCTACTTTGCCATTGGCGCCGTGACCTTGTCGGAGCTTAAGCG
TCGCTTCCCACTGGAATTAGTGGTGATAGTTGGCAGTGCCTTAGGGCTGGCGAATCTGATGATGAGCACTGGCCTTGCCG
ATGGGTTAGCGCAAGGCTTGCTCGGTACCATCAATGGTTATGGAGTGTTTGGCGCCTTTGTGGGTGTCTATTTAGTCACC
TTATTGTTGACTGAACTCGTTACCAATAATGCCGCGGCGGCCTTGGCCTTTCCTATTGCCTATGCGGTGGCGCTGAATTA
TGGCGTCGATCCTAGGCCATTTATTATGGCGGTAGTGTTTGGGGCCAGTGCCAGTTTTATTTCGCCCTACGGTTATCAAA
CCAACTTGATGGTGTTTAACGCGGGCAACTATCGTTTCAGTGACTTTTTGCGCTTAGGGCTACCGCTATCTGTGCTTTAT
TCCCTGATAGTGATTTTTATGGTGCCAGTCATCTTTCCGTTTTAA

Upstream 100 bases:

>100_bases
CTCACAATTTAGCGCCTTTGAAATCGAGTTTAATGCGCTGGTGCGTAAGCACTTCCCGCATTGGCAAGCGATTGATATTT
CAAAGCTTGGAGCCTAATAC

Downstream 100 bases:

>100_bases
TGATTTTTTGCTTTGGGCTTTTGCGGTCTAAGGTTTGAGGAGTGTTTATGAGCAATATTGTGTGGCACCAACATAGTGTC
GACCAAGCGGCCAGAGCGAA

Product: TrkA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MSDLWLLAIVLFGLVAGLIAGRINPAVLFLFAFLLCYLLGMVSLDTALTSFTNTGLVTLVLLVLAATALEKTSLLGKLSQ
VIGNNSLAVTMAKLGFSTALLSSFTNNTAVVASLIGVVRRNQAHAPAKLLLPLNYAAILGGTLTLIGTSTNLIVNSFVEN
AGLPALGFFEFTPVAMLIVLLGIVLLIVLANTLPDRREDSTEETLPYLLEAHVAKGSSLVGRSVVDNKLRALKKLYLVEL
ERSGICICPVPPQLVLQADDVLRFSGAVESVELLHQFDGLDWFGKHQAKGQNLVEAVLAPSSSLVGSTLKESRFREQFDA
AVMAIRRGHHPLKGGLGDIVLQPGDVLLLTPGDGFSTNAKLSTEFAAVSGLDLNVRLDSRRSRFVLSSFVITIVLSLTGV
LPLAKGLVLLLLSYFAIGAVTLSELKRRFPLELVVIVGSALGLANLMMSTGLADGLAQGLLGTINGYGVFGAFVGVYLVT
LLLTELVTNNAAAALAFPIAYAVALNYGVDPRPFIMAVVFGASASFISPYGYQTNLMVFNAGNYRFSDFLRLGLPLSVLY
SLIVIFMVPVIFPF

Sequences:

>Translated_574_residues
MSDLWLLAIVLFGLVAGLIAGRINPAVLFLFAFLLCYLLGMVSLDTALTSFTNTGLVTLVLLVLAATALEKTSLLGKLSQ
VIGNNSLAVTMAKLGFSTALLSSFTNNTAVVASLIGVVRRNQAHAPAKLLLPLNYAAILGGTLTLIGTSTNLIVNSFVEN
AGLPALGFFEFTPVAMLIVLLGIVLLIVLANTLPDRREDSTEETLPYLLEAHVAKGSSLVGRSVVDNKLRALKKLYLVEL
ERSGICICPVPPQLVLQADDVLRFSGAVESVELLHQFDGLDWFGKHQAKGQNLVEAVLAPSSSLVGSTLKESRFREQFDA
AVMAIRRGHHPLKGGLGDIVLQPGDVLLLTPGDGFSTNAKLSTEFAAVSGLDLNVRLDSRRSRFVLSSFVITIVLSLTGV
LPLAKGLVLLLLSYFAIGAVTLSELKRRFPLELVVIVGSALGLANLMMSTGLADGLAQGLLGTINGYGVFGAFVGVYLVT
LLLTELVTNNAAAALAFPIAYAVALNYGVDPRPFIMAVVFGASASFISPYGYQTNLMVFNAGNYRFSDFLRLGLPLSVLY
SLIVIFMVPVIFPF
>Mature_573_residues
SDLWLLAIVLFGLVAGLIAGRINPAVLFLFAFLLCYLLGMVSLDTALTSFTNTGLVTLVLLVLAATALEKTSLLGKLSQV
IGNNSLAVTMAKLGFSTALLSSFTNNTAVVASLIGVVRRNQAHAPAKLLLPLNYAAILGGTLTLIGTSTNLIVNSFVENA
GLPALGFFEFTPVAMLIVLLGIVLLIVLANTLPDRREDSTEETLPYLLEAHVAKGSSLVGRSVVDNKLRALKKLYLVELE
RSGICICPVPPQLVLQADDVLRFSGAVESVELLHQFDGLDWFGKHQAKGQNLVEAVLAPSSSLVGSTLKESRFREQFDAA
VMAIRRGHHPLKGGLGDIVLQPGDVLLLTPGDGFSTNAKLSTEFAAVSGLDLNVRLDSRRSRFVLSSFVITIVLSLTGVL
PLAKGLVLLLLSYFAIGAVTLSELKRRFPLELVVIVGSALGLANLMMSTGLADGLAQGLLGTINGYGVFGAFVGVYLVTL
LLTELVTNNAAAALAFPIAYAVALNYGVDPRPFIMAVVFGASASFISPYGYQTNLMVFNAGNYRFSDFLRLGLPLSVLYS
LIVIFMVPVIFPF

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=617, Percent_Identity=27.7147487844408, Blast_Score=170, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI17551790, Length=135, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 61061; Mature: 60930

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLWLLAIVLFGLVAGLIAGRINPAVLFLFAFLLCYLLGMVSLDTALTSFTNTGLVTLV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLVLAATALEKTSLLGKLSQVIGNNSLAVTMAKLGFSTALLSSFTNNTAVVASLIGVVRR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
NQAHAPAKLLLPLNYAAILGGTLTLIGTSTNLIVNSFVENAGLPALGFFEFTPVAMLIVL
CCCCCCEEEEEECCHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LGIVLLIVLANTLPDRREDSTEETLPYLLEAHVAKGSSLVGRSVVDNKLRALKKLYLVEL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEE
ERSGICICPVPPQLVLQADDVLRFSGAVESVELLHQFDGLDWFGKHQAKGQNLVEAVLAP
CCCCEEEECCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
SSSLVGSTLKESRFREQFDAAVMAIRRGHHPLKGGLGDIVLQPGDVLLLTPGDGFSTNAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC
LSTEFAAVSGLDLNVRLDSRRSRFVLSSFVITIVLSLTGVLPLAKGLVLLLLSYFAIGAV
CCHHHHHEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSELKRRFPLELVVIVGSALGLANLMMSTGLADGLAQGLLGTINGYGVFGAFVGVYLVT
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLLTELVTNNAAAALAFPIAYAVALNYGVDPRPFIMAVVFGASASFISPYGYQTNLMVFN
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEE
AGNYRFSDFLRLGLPLSVLYSLIVIFMVPVIFPF
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDLWLLAIVLFGLVAGLIAGRINPAVLFLFAFLLCYLLGMVSLDTALTSFTNTGLVTLV
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LLVLAATALEKTSLLGKLSQVIGNNSLAVTMAKLGFSTALLSSFTNNTAVVASLIGVVRR
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
NQAHAPAKLLLPLNYAAILGGTLTLIGTSTNLIVNSFVENAGLPALGFFEFTPVAMLIVL
CCCCCCEEEEEECCHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LGIVLLIVLANTLPDRREDSTEETLPYLLEAHVAKGSSLVGRSVVDNKLRALKKLYLVEL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEE
ERSGICICPVPPQLVLQADDVLRFSGAVESVELLHQFDGLDWFGKHQAKGQNLVEAVLAP
CCCCEEEECCCHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
SSSLVGSTLKESRFREQFDAAVMAIRRGHHPLKGGLGDIVLQPGDVLLLTPGDGFSTNAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC
LSTEFAAVSGLDLNVRLDSRRSRFVLSSFVITIVLSLTGVLPLAKGLVLLLLSYFAIGAV
CCHHHHHEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLSELKRRFPLELVVIVGSALGLANLMMSTGLADGLAQGLLGTINGYGVFGAFVGVYLVT
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LLLTELVTNNAAAALAFPIAYAVALNYGVDPRPFIMAVVFGASASFISPYGYQTNLMVFN
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEE
AGNYRFSDFLRLGLPLSVLYSLIVIFMVPVIFPF
CCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]