| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is btuB [H]
Identifier: 117919206
GI number: 117919206
Start: 874239
End: 876824
Strand: Direct
Name: btuB [H]
Synonym: Shewana3_0754
Alternate gene names: 117919206
Gene position: 874239-876824 (Clockwise)
Preceding gene: 117919201
Following gene: 117919207
Centisome position: 17.58
GC content: 49.42
Gene sequence:
>2586_bases ATGAAAAGACCTCAGATTCTACCCAGTGCTTGTGCTATTGCGATCGCAATGGCATTTGCCCCGAGTATTAGCTATGCAGC CGATAACGGCGCTGACAAAGTTGAACGCATTGAAGTAACGGGCTCTCGTATTAAGCGCACTGATATCGAGGGACCGTCAC CCATTCAATCCATTGGCAAAGAAGATATTGCCAACATGGGTTTTGACAACCTGCAGCAGTTACTCGAACGTATGCCTGCC AACGGTGCTGGCGCTTTCTCTACCCGTGGCAACAGCCAAGACTCGACCGCAAACGGTGGTGCTTCAATTAGTTTACGTGG CTTAGGCCCTGACGCCACTCTGGTATTGATTAACGGTCGCCGTGTTGCGGCAAGTGCCTTTGCTGAAGGTATCACTAACT CCTTCGTCGACATTAACAACATTCCGGTTTCGGCGATTGAACGCATTGATATTCTGAAAGATGGTGCATCGGCGATTTAC GGTTCCGATGCGATTGCAGGCGTAGTTAACATCGTCTTGAAAAAAGACATCGAAGGGATTGAGGTTAACTTAGGTTACGG CGACACCCCAGGTACGGGTTACGATGAAACCACGGCAAGCGTCGTTTGGGGCGTCAAGTCCGAAAAGGGTAGTGCGTCGG TTATTCTCGATTATTTTAAAAACGATACCTTATCGGCAACCGATTTGGGCCGTTTTGGCACAGCCGATCAAAGCCCTTAC GGTGGTGAAGATTTCCGTTCCTCACGCGGTTTCCCCGGTTATTTTTATGTCGATGGTGTGAAGACTATCGACCCATCCTG TCCGCCCGATCGTGCAACGGCCAGCGGCAGCTGTTTATTTGACTATGGTCCATACAACTTAGTGATCCCTGAGGCTGAGC GTATCGGGGCTATTGGTCAATTCGATTACCATTTCAATGACGATTTAACCGCGTTCCTCGAGTTAGCCGCGCAACATAAC TCTTCAATTGCGGGTGGTGCACCAACACCTTTGGATGAAGATGCGGCCTTAACTGTGCCAGGCACTCACCCAAATAATCC TTGGGGCAAAGATATTGAAATCGGTCGTTTCCGTACAGTGGATGCGGGCGCACGTCGTTGGGATATCGAGTCCGACACCC TGCGTTTAGTGGCGGGTTTACGTGGCACGATTAAAGAGTGGGATTGGGAAGCCTCGGTACAACGCGGCCGCAGTGAATCG ACTCAAACGGGCGATCGTACTCAAGGTTGGGTCAGAACCGATTACCTGCAAGCCGAAATTGATGCGGGTCGCTACAATCC CTTTGGCGGTACCATGAACTCGCAGGATGTGATCGATGCGATTACCACTAGCCTAGTTCGCCAAGGTTTATCGAGCATGA CGTCATACGCGGCGAACATTTCGGGCCAAGCGTTCACGCTGGCAGACCGCGATATTATGATGGCGGCAGGTGTGGAATAC CGTGAAGAAAGTGTCAGCGACGTACCAGATGAACAGTTCCAACGTGGGCTGATTTTCGGTACCGAAGCGGTTTCAGCTGC GGCCTCCCGTGACCAATACGCAGGTTATGTGGAGTTCTCTATTCCTGTCACGGATAACTTTGAGCTGCAACTCGCGGGTC GCTACGATCATTACAGCGATTTTGGTTCAACCACTAACCCTAAAGTGGCGTTCCAATGGGGCATCACCGATGAGCTGACG AGCCGTGGTTCTTGGTCAACGGGTTTCCGCGCGCCTTCATTAGCACAAATCGGTTTAGGCCCATCACGCGAAAGTAGCTT CTTTATCGATACTTATCGCTGCGCCGCCGATGGTGTGGATTGTGAAGCGCTCGACTATAACACTGAATTCCAAGGTAACT CTGAGTTGGATGCCGAAGAGTCAGAAACATGGAACCTTGGACTTATCTGGGCGCCAAGCCAGAAGTTTGATATCGGTTTC GATGTTTACAGCATCACTCAAGATAACAAGATCGATAAGCAGCCATTGGGTGATATCTACACCGCAAACTGTAACGATCA AAACAGCACAGTGTGTGAGCGTTTAGCACCGCAAGCGGGTCAAACCTTAGGTCCTATCAGCATTATTCACTCAAGCTTTA TCAACTTAAGCTCGCAGGATGTGCAGGGTGTTGACCTGTCAACTCACTATGGTCTTGAGCTAGATAGCTTTGGTGATTTG AAGTTTGGCCTAGAGTACAGCTACCTACATAACTTCGAAAAAGACGGTCTCGATTACACTGGCGAGTACAAGTTCCCACA ACATCGCTGGTTACTCACCACGAATTGGACCATGGATAACTTCGCCGCCAACGTAAACCTGAGCTACATCGGTGAGTTCG AAGATACTCCAGATATCGACTTTGACGGCGTGTTAGACTTCGAAACGAACAAGTCTCGTATGGTTGATGCACAGTTATTA GTTGATATGTCAGGTAGTTACCGTTTCAACGAGATGTTTAAGCTGACATTAGGCGTGAACAACCTGTTCGATGAAGAGCC ACCGTTTGCGATTGGTGACGGCGATACCGACCTCTATGGTTATGTGATTTCTGTACACAACCCAATGGGACGTTATATCT ACACCAAACTGACAATGAACTTCTAA
Upstream 100 bases:
>100_bases CCCCCATTGACTTTGTTTTACAACCGATTACCTTGGTTGTGTTAAAAATTAGTTTAATAAAAGTAAAATAAATTTAACAA ATCAAGATTAGGGGATGTAA
Downstream 100 bases:
>100_bases CGAGTCATTGATTGAGTCATAGGAAACGGCGCTTCGGCGCCGTTTTTGTATTTTACTCTGCCGCGACACAGTGTATCTTC GTTCTCGTTAATCAGTCATC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 861; Mature: 861
Protein sequence:
>861_residues MKRPQILPSACAIAIAMAFAPSISYAADNGADKVERIEVTGSRIKRTDIEGPSPIQSIGKEDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIVLKKDIEGIEVNLGYGDTPGTGYDETTASVVWGVKSEKGSASVILDYFKNDTLSATDLGRFGTADQSPY GGEDFRSSRGFPGYFYVDGVKTIDPSCPPDRATASGSCLFDYGPYNLVIPEAERIGAIGQFDYHFNDDLTAFLELAAQHN SSIAGGAPTPLDEDAALTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGTIKEWDWEASVQRGRSES TQTGDRTQGWVRTDYLQAEIDAGRYNPFGGTMNSQDVIDAITTSLVRQGLSSMTSYAANISGQAFTLADRDIMMAAGVEY REESVSDVPDEQFQRGLIFGTEAVSAAASRDQYAGYVEFSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGITDELT SRGSWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADGVDCEALDYNTEFQGNSELDAEESETWNLGLIWAPSQKFDIGF DVYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQAGQTLGPISIIHSSFINLSSQDVQGVDLSTHYGLELDSFGDL KFGLEYSYLHNFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANVNLSYIGEFEDTPDIDFDGVLDFETNKSRMVDAQLL VDMSGSYRFNEMFKLTLGVNNLFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF
Sequences:
>Translated_861_residues MKRPQILPSACAIAIAMAFAPSISYAADNGADKVERIEVTGSRIKRTDIEGPSPIQSIGKEDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIVLKKDIEGIEVNLGYGDTPGTGYDETTASVVWGVKSEKGSASVILDYFKNDTLSATDLGRFGTADQSPY GGEDFRSSRGFPGYFYVDGVKTIDPSCPPDRATASGSCLFDYGPYNLVIPEAERIGAIGQFDYHFNDDLTAFLELAAQHN SSIAGGAPTPLDEDAALTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGTIKEWDWEASVQRGRSES TQTGDRTQGWVRTDYLQAEIDAGRYNPFGGTMNSQDVIDAITTSLVRQGLSSMTSYAANISGQAFTLADRDIMMAAGVEY REESVSDVPDEQFQRGLIFGTEAVSAAASRDQYAGYVEFSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGITDELT SRGSWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADGVDCEALDYNTEFQGNSELDAEESETWNLGLIWAPSQKFDIGF DVYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQAGQTLGPISIIHSSFINLSSQDVQGVDLSTHYGLELDSFGDL KFGLEYSYLHNFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANVNLSYIGEFEDTPDIDFDGVLDFETNKSRMVDAQLL VDMSGSYRFNEMFKLTLGVNNLFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF >Mature_861_residues MKRPQILPSACAIAIAMAFAPSISYAADNGADKVERIEVTGSRIKRTDIEGPSPIQSIGKEDIANMGFDNLQQLLERMPA NGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGRRVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIY GSDAIAGVVNIVLKKDIEGIEVNLGYGDTPGTGYDETTASVVWGVKSEKGSASVILDYFKNDTLSATDLGRFGTADQSPY GGEDFRSSRGFPGYFYVDGVKTIDPSCPPDRATASGSCLFDYGPYNLVIPEAERIGAIGQFDYHFNDDLTAFLELAAQHN SSIAGGAPTPLDEDAALTVPGTHPNNPWGKDIEIGRFRTVDAGARRWDIESDTLRLVAGLRGTIKEWDWEASVQRGRSES TQTGDRTQGWVRTDYLQAEIDAGRYNPFGGTMNSQDVIDAITTSLVRQGLSSMTSYAANISGQAFTLADRDIMMAAGVEY REESVSDVPDEQFQRGLIFGTEAVSAAASRDQYAGYVEFSIPVTDNFELQLAGRYDHYSDFGSTTNPKVAFQWGITDELT SRGSWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADGVDCEALDYNTEFQGNSELDAEESETWNLGLIWAPSQKFDIGF DVYSITQDNKIDKQPLGDIYTANCNDQNSTVCERLAPQAGQTLGPISIIHSSFINLSSQDVQGVDLSTHYGLELDSFGDL KFGLEYSYLHNFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANVNLSYIGEFEDTPDIDFDGVLDFETNKSRMVDAQLL VDMSGSYRFNEMFKLTLGVNNLFDEEPPFAIGDGDTDLYGYVISVHNPMGRYIYTKLTMNF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=242, Percent_Identity=26.4462809917355, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1788478, Length=172, Percent_Identity=33.1395348837209, Blast_Score=82, Evalue=1e-16,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93949; Mature: 93949
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRPQILPSACAIAIAMAFAPSISYAADNGADKVERIEVTGSRIKRTDIEGPSPIQSIGK CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHCH EDIANMGFDNLQQLLERMPANGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGR HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC RVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIVLKKDIEGI CHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCEE EVNLGYGDTPGTGYDETTASVVWGVKSEKGSASVILDYFKNDTLSATDLGRFGTADQSPY EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCC GGEDFRSSRGFPGYFYVDGVKTIDPSCPPDRATASGSCLFDYGPYNLVIPEAERIGAIGQ CCCHHHHCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEECCCCEEEECCHHHCCCEEE FDYHFNDDLTAFLELAAQHNSSIAGGAPTPLDEDAALTVPGTHPNNPWGKDIEIGRFRTV ECEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCEEEEE DAGARRWDIESDTLRLVAGLRGTIKEWDWEASVQRGRSESTQTGDRTQGWVRTDYLQAEI CCCCEEECCCHHHHHHHHHCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEECEEEEEE DAGRYNPFGGTMNSQDVIDAITTSLVRQGLSSMTSYAANISGQAFTLADRDIMMAAGVEY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCHH REESVSDVPDEQFQRGLIFGTEAVSAAASRDQYAGYVEFSIPVTDNFELQLAGRYDHYSD HHHHHCCCCHHHHHCCEEEEHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCHHH FGSTTNPKVAFQWGITDELTSRGSWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADGVD CCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEHHCCCCC CEALDYNTEFQGNSELDAEESETWNLGLIWAPSQKFDIGFDVYSITQDNKIDKQPLGDIY CEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE TANCNDQNSTVCERLAPQAGQTLGPISIIHSSFINLSSQDVQGVDLSTHYGLELDSFGDL ECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECEECCCEECCCCCE KFGLEYSYLHNFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANVNLSYIGEFEDTPDID EECEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHEEEEEEEEEEECCCCCCCCC FDGVLDFETNKSRMVDAQLLVDMSGSYRFNEMFKLTLGVNNLFDEEPPFAIGDGDTDLYG CCCEEEECCCCCCEEEEEEEEECCCCEEECEEEEEEECCHHHCCCCCCEEECCCCCCEEE YVISVHNPMGRYIYTKLTMNF EEEEECCCCCCEEEEEEEECC >Mature Secondary Structure MKRPQILPSACAIAIAMAFAPSISYAADNGADKVERIEVTGSRIKRTDIEGPSPIQSIGK CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCHHHHHCH EDIANMGFDNLQQLLERMPANGAGAFSTRGNSQDSTANGGASISLRGLGPDATLVLINGR HHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEECC RVAASAFAEGITNSFVDINNIPVSAIERIDILKDGASAIYGSDAIAGVVNIVLKKDIEGI CHHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHCCCCEE EVNLGYGDTPGTGYDETTASVVWGVKSEKGSASVILDYFKNDTLSATDLGRFGTADQSPY EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCC GGEDFRSSRGFPGYFYVDGVKTIDPSCPPDRATASGSCLFDYGPYNLVIPEAERIGAIGQ CCCHHHHCCCCCCEEEECCEEECCCCCCCCCCCCCCCEEEECCCCEEEECCHHHCCCEEE FDYHFNDDLTAFLELAAQHNSSIAGGAPTPLDEDAALTVPGTHPNNPWGKDIEIGRFRTV ECEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEECCEEEEE DAGARRWDIESDTLRLVAGLRGTIKEWDWEASVQRGRSESTQTGDRTQGWVRTDYLQAEI CCCCEEECCCHHHHHHHHHCCCHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEECEEEEEE DAGRYNPFGGTMNSQDVIDAITTSLVRQGLSSMTSYAANISGQAFTLADRDIMMAAGVEY CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCHH REESVSDVPDEQFQRGLIFGTEAVSAAASRDQYAGYVEFSIPVTDNFELQLAGRYDHYSD HHHHHCCCCHHHHHCCEEEEHHHHHHHHCCCCCCEEEEEEEEECCCEEEEEEECCCCHHH FGSTTNPKVAFQWGITDELTSRGSWSTGFRAPSLAQIGLGPSRESSFFIDTYRCAADGVD CCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCEEEEEEEHHCCCCC CEALDYNTEFQGNSELDAEESETWNLGLIWAPSQKFDIGFDVYSITQDNKIDKQPLGDIY CEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCEE TANCNDQNSTVCERLAPQAGQTLGPISIIHSSFINLSSQDVQGVDLSTHYGLELDSFGDL ECCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECEECCCEECCCCCE KFGLEYSYLHNFEKDGLDYTGEYKFPQHRWLLTTNWTMDNFAANVNLSYIGEFEDTPDID EECEEEHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCHHHEEEEEEEEEEECCCCCCCCC FDGVLDFETNKSRMVDAQLLVDMSGSYRFNEMFKLTLGVNNLFDEEPPFAIGDGDTDLYG CCCEEEECCCCCCEEEEEEEEECCCCEEECEEEEEEECCHHHCCCCCCEEECCCCCCEEE YVISVHNPMGRYIYTKLTMNF EEEEECCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA