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The map label for this gene is ygdL [H]

Identifier: 117919187

GI number: 117919187

Start: 854196

End: 855029

Strand: Direct

Name: ygdL [H]

Synonym: Shewana3_0735

Alternate gene names: 117919187

Gene position: 854196-855029 (Clockwise)

Preceding gene: 117919184

Following gene: 117919189

Centisome position: 17.18

GC content: 49.64

Gene sequence:

>834_bases
ATGACTGAAGCCTATCAGAATCGCTTTAGTGGCATTGGCCGCTTGTACGGGCAAAAGGCGCTCGCTAAATTTGCCGCCTC
CCATGTGGTGGTGATTGGCATTGGCGGCGTTGGCACATGGGCGGCTGAGGCGTTGGCGCGCAGTGGTATTGGCCAAATCA
CCTTGATTGATTTGGATGATATCTGTGTAACGAACACCAACCGTCAAATTCATGCTCTGTCATCGACAATTGGTGAGTCT
AAAGTGGCTGTGATGGCGCAGCGGATCCGTTCGATCAACCCCGATTGTCAAGTCAATGAAGTGGAAGACTTTATTACAGT
CGATAACCTTGGTGAGTATTTGCTTGGGGCCAAGGCGGGTGGCAATATTGATTATGTAGTGGATTGTATTGATGCGGTTA
AGCAAAAGGCGGCGCTGATTGCTTGGTGTAAACGTCAAAAAATTAAGATAGTGACCGTTGGCGGCGCGGGCGGCCAAACC
GATCCAACACAGATCCAGCTTACCGATCTGGCTAAAACCTACCAAGATCCTTTATTGGCCAAAGTGCGTAATATTTTGCG
CCGCGAATATAACTTTTCCAAAAATGTGCAGCGCCGTTTTGCCGTCGATGCAGTGTTTTCCAGTGAGCAATTAGTTTATC
CCCAAGCCGATGGTTCTGTGTGTAGTAGCAAAGCGACGGCCGATGGTTCTATGCGCATGGATTGTGCTTCTGGCTTTGGC
GCCGTCACTATGGTGACTGGGACTTTTGGTTTTGTGGCGGCTAGCCGGGTACTTGCTAGGCTCGCCCAAATTGCAAATGA
ACCCGTTGCAAATGAACCAGCTGCGAGTGAATAA

Upstream 100 bases:

>100_bases
TATAAAATCCACGGCGCATTTTTATTGCGTTACGCTGCTGTAGATTGTCTTTTACATCCTCTAAGGTGGCCATTGTTAGT
TAGATATAAGGTAAGTATTG

Downstream 100 bases:

>100_bases
GCGGTAATCGATAAGATAAAGTCTCAAGGTTAAAAACTAAATCCACAGCCAATGCTGTGGATTTTTGTTTAGTGGCACCA
GAGTTTGCTTTATTCGCCTT

Product: UBA/THIF-type NAD/FAD binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MTEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDDICVTNTNRQIHALSSTIGES
KVAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAGGNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQT
DPTQIQLTDLAKTYQDPLLAKVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFG
AVTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE

Sequences:

>Translated_277_residues
MTEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDDICVTNTNRQIHALSSTIGES
KVAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAGGNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQT
DPTQIQLTDLAKTYQDPLLAKVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFG
AVTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE
>Mature_276_residues
TEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDDICVTNTNRQIHALSSTIGESK
VAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAGGNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQTD
PTQIQLTDLAKTYQDPLLAKVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFGA
VTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=261, Percent_Identity=60.9195402298851, Blast_Score=340, Evalue=8e-95,
Organism=Escherichia coli, GI87082356, Length=147, Percent_Identity=36.0544217687075, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787048, Length=136, Percent_Identity=30.8823529411765, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321790, Length=250, Percent_Identity=26, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6322825, Length=237, Percent_Identity=27.4261603375527, Blast_Score=100, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 29583; Mature: 29452

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDD
CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCC
ICVTNTNRQIHALSSTIGESKVAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAG
EEEECCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQTDPTQIQLTDLAKTYQDPLLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHCHHHH
KVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCEEEEHHCCCC
AVTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TEAYQNRFSGIGRLYGQKALAKFAASHVVVIGIGGVGTWAAEALARSGIGQITLIDLDD
CHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCC
ICVTNTNRQIHALSSTIGESKVAVMAQRIRSINPDCQVNEVEDFITVDNLGEYLLGAKAG
EEEECCCCHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
GNIDYVVDCIDAVKQKAALIAWCKRQKIKIVTVGGAGGQTDPTQIQLTDLAKTYQDPLLA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHCHHHH
KVRNILRREYNFSKNVQRRFAVDAVFSSEQLVYPQADGSVCSSKATADGSMRMDCASGFG
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCEEEEHHCCCC
AVTMVTGTFGFVAASRVLARLAQIANEPVANEPAASE
EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]