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The map label for this gene is yrbD [C]

Identifier: 117919132

GI number: 117919132

Start: 799114

End: 799587

Strand: Direct

Name: yrbD [C]

Synonym: Shewana3_0680

Alternate gene names: 117919132

Gene position: 799114-799587 (Clockwise)

Preceding gene: 117919131

Following gene: 117919133

Centisome position: 16.07

GC content: 45.57

Gene sequence:

>474_bases
ATGTTGACACGAAAAATTGAATTATTAGTGGGTATGTTTCTCTTAACGGGCTTAGCGGCCTTTTTGGTGTTGGTGTTTAA
AGTCGCCAATATCGAAGTGCAGACCAGCGACAGCAGCTATACCCTCACCGCCAACTTCACCAATATCGGTGGCTTAAAGG
TACGCTCTCCGGTCAAGGTCGGCGGCGTAGTGGTTGGCCGCGTGAGTAAGATAGATTTAGACCCAGTCAAACTGGTGGCT
GTGGTGACGATTGTAATGGACAAGCGTTTCGATAAATTCCCTGAAACCAGTAGCTTAGCTATTTTAACTTCAGGTTTACT
CGGTGAGCAGTTCCTCGGATTAACACCGGGCTTTGTCGATGATGACGTGAGTATGCTTAAGGATGGCGACAAGATTGACG
ATACTCGCTCCGCATTAGTGTTAGAAGATCTGATTGGTCAGTTCTTATATAGTATGGGTTCAAAGGATAAATAG

Upstream 100 bases:

>100_bases
ACTGGCATTGGACTTTTTACTAACAGCCCTGATGTTTGGCCGCTAACGGATTGCAGCGCCAAGGATACAGATAGACGGAT
TAACAGAGTGGTAACTGAGC

Downstream 100 bases:

>100_bases
GGGTTACCGCTATGTTGAAACGCTTATCGCGCTTTTTACTGCCGTTAGTATGGATATTTACCGCAACGACCGCACTGGCG
GATGATGCACCGATTAACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MLTRKIELLVGMFLLTGLAAFLVLVFKVANIEVQTSDSSYTLTANFTNIGGLKVRSPVKVGGVVVGRVSKIDLDPVKLVA
VVTIVMDKRFDKFPETSSLAILTSGLLGEQFLGLTPGFVDDDVSMLKDGDKIDDTRSALVLEDLIGQFLYSMGSKDK

Sequences:

>Translated_157_residues
MLTRKIELLVGMFLLTGLAAFLVLVFKVANIEVQTSDSSYTLTANFTNIGGLKVRSPVKVGGVVVGRVSKIDLDPVKLVA
VVTIVMDKRFDKFPETSSLAILTSGLLGEQFLGLTPGFVDDDVSMLKDGDKIDDTRSALVLEDLIGQFLYSMGSKDK
>Mature_157_residues
MLTRKIELLVGMFLLTGLAAFLVLVFKVANIEVQTSDSSYTLTANFTNIGGLKVRSPVKVGGVVVGRVSKIDLDPVKLVA
VVTIVMDKRFDKFPETSSLAILTSGLLGEQFLGLTPGFVDDDVSMLKDGDKIDDTRSALVLEDLIGQFLYSMGSKDK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=157, Percent_Identity=56.0509554140127, Blast_Score=158, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 16960; Mature: 16960

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRKIELLVGMFLLTGLAAFLVLVFKVANIEVQTSDSSYTLTANFTNIGGLKVRSPVKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCEEECCCCCC
GGVVVGRVSKIDLDPVKLVAVVTIVMDKRFDKFPETSSLAILTSGLLGEQFLGLTPGFVD
CCEEEECCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
DDVSMLKDGDKIDDTRSALVLEDLIGQFLYSMGSKDK
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLTRKIELLVGMFLLTGLAAFLVLVFKVANIEVQTSDSSYTLTANFTNIGGLKVRSPVKV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCEEECCCCCC
GGVVVGRVSKIDLDPVKLVAVVTIVMDKRFDKFPETSSLAILTSGLLGEQFLGLTPGFVD
CCEEEECCEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
DDVSMLKDGDKIDDTRSALVLEDLIGQFLYSMGSKDK
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]