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The map label for this gene is yciR [C]

Identifier: 117918910

GI number: 117918910

Start: 528926

End: 529912

Strand: Direct

Name: yciR [C]

Synonym: Shewana3_0454

Alternate gene names: 117918910

Gene position: 528926-529912 (Clockwise)

Preceding gene: 117918909

Following gene: 117918916

Centisome position: 10.64

GC content: 50.05

Gene sequence:

>987_bases
GTGGTAGCGGATTCTGCAGCACAAATAAAGCAACTTCAGGCCGAAATCGCCGAGCTTAAACGTGAAAATGCGCGGTTAAC
GGCGCTCAATAATCGCGCCGAAGAAAAACTCTTTGCCGCCCTCGATGGCAATGGCTTGTGTTTGTGGGAGCAGCATGTTC
CCAGTGGCAATCTCACCCTGTTCAATGTGAAGTGGGGCGAACTGCTCGGCTTTAGCCGCGAGGAGCTTCGTGCCCATGTC
GACAGTTGGAAAAGTAAACTTCATCCAGAGGATAAAGACTGGGTAATCAAAGCCTTTGAAGACCATGTGAATGGCAAGGC
CGATTATTATCAGGTCGTGCACCGTATGCTGCACAAAGATGGCAGCATTACTTGGGTGTCGGATCGTGGCCGCATTGTTG
AGCGTTTACCTGATGGCACGCCACTGCGGATGATGGGCAGCCATATCGATATCACTCAAGAAAAGCGCTACGAGCTGGAT
TTAGCCCGACTAGCCCATAGCGATCCACTCACCAACTTAATGAACCGCCAAGCCATCGCCAAGGCCTTCGATGAGTTATT
ACAACCCGGCCAGCGCGGGGCGTTATTCTTTATCGATCTTGATGGTTTTAAAGCCTTAAATGATCACCATGGCCACAAAT
TTGGCGATAACTTATTGGTGCATGTGGCGCATTCATTAGTAGAGCATTCGGGGGCGCAGGCAAAGATCGCGCGGCTCGGT
GGGGACGAGTTTGTGATTGTCCTGCTATCTTCGGATATAGAAGCCCTAGGCATGCTCGCGCAATCCTTACTGGATGTTTA
TCGACAGCGTTTCTTGCTCGATGGTTGTGAAGTGGCGATTAGCTTGAGTATCGGTATCGATATTTTTGAGTACGGCGATC
GTTTTACTCAAAGCTGCGATCGCGCCGATGCGGCTATGTATCGTATTAAACACCAAGGGAAAAACGGCTACAGCTTCTCT
CGGAATGAGAGCAGTATTAACCGCTAA

Upstream 100 bases:

>100_bases
TTGCTACGTCCTTTTGGCTTTATCCTTTTGACTATGTCCCTTCGGCATGAACTGTTTTACACTGGACGAAAATTCCCCAA
TTTAATGACAGAGATTTTTC

Downstream 100 bases:

>100_bases
TGGGCGGCGGACGCGCCGTGCTTGCGCGTCCTCCTTCCTACAGTGATATTCACAGCTGACAGCCCCACACCTCAACGGCG
GCATCTTGTTTGTTCGGCTG

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAIAKAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLLSSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFTQSCDRADAAMYRIKHQGKNGYSFS
RNESSINR

Sequences:

>Translated_328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAIAKAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLLSSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFTQSCDRADAAMYRIKHQGKNGYSFS
RNESSINR
>Mature_328_residues
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTLFNVKWGELLGFSREELRAHV
DSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKDGSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELD
LARLAHSDPLTNLMNRQAIAKAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
GDEFVIVLLSSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFTQSCDRADAAMYRIKHQGKNGYSFS
RNESSINR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.8983050847458, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=35.6687898089172, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081881, Length=222, Percent_Identity=30.1801801801802, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788381, Length=189, Percent_Identity=33.8624338624339, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI145693134, Length=154, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081921, Length=169, Percent_Identity=26.6272189349112, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=182, Percent_Identity=31.8681318681319, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=26.4423076923077, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=28.9617486338798, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=30.9090909090909, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 37016; Mature: 37016

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHEEEECCCEEEEEECCCCCCCEEE
FNVKWGELLGFSREELRAHVDSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKD
EEECHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELDLARLAHSDPLTNLMNRQAIA
CCEEEECCCCHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
HHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEHEECC
GDEFVIVLLSSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFTQSCD
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
RADAAMYRIKHQGKNGYSFSRNESSINR
HHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVADSAAQIKQLQAEIAELKRENARLTALNNRAEEKLFAALDGNGLCLWEQHVPSGNLTL
CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHEEEECCCEEEEEECCCCCCCEEE
FNVKWGELLGFSREELRAHVDSWKSKLHPEDKDWVIKAFEDHVNGKADYYQVVHRMLHKD
EEECHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GSITWVSDRGRIVERLPDGTPLRMMGSHIDITQEKRYELDLARLAHSDPLTNLMNRQAIA
CCEEEECCCCHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KAFDELLQPGQRGALFFIDLDGFKALNDHHGHKFGDNLLVHVAHSLVEHSGAQAKIARLG
HHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEHEECC
GDEFVIVLLSSDIEALGMLAQSLLDVYRQRFLLDGCEVAISLSIGIDIFEYGDRFTQSCD
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
RADAAMYRIKHQGKNGYSFSRNESSINR
HHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]