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The map label for this gene is frdC [H]

Identifier: 117918858

GI number: 117918858

Start: 460293

End: 461018

Strand: Direct

Name: frdC [H]

Synonym: Shewana3_0401

Alternate gene names: 117918858

Gene position: 460293-461018 (Clockwise)

Preceding gene: 117918852

Following gene: 117918859

Centisome position: 9.26

GC content: 50.14

Gene sequence:

>726_bases
ATGACAAGCGTAACGCGCGTTCACACTAGCGTGAAAACACAGGGGATAGGTCACCCTTGGTCGGCCAAGGCCGATAGATT
ACAGAGCGCGACTGGTATTATGCTGGGCTGCTTTCTGTTGTTACATATGCATTTCGAGTCGAGCATTCTGCTGGGTAAAG
AGGCCTTTTACCATGTGGTGCAGTTGCTCGAAGGCGGTATGTTTAGCAGTACGGGCCATGGCTTTCCGATTGTCACTAAA
GTCTTCTCAGTGTTTATGCTGCTCGTGGTGATTCTACATGCAGCCGTTGCTCTTAGACGGTTTCCGGCGCAGCTTGGGCA
GTGGCGAGCGTTGCGATCACATTTAGGTGGCATTAAACATCGCGATACCCATGCTTGGTTTTGGCAGTTGATCACGGGTT
TTATTCTGTTTTTCCTGGTGCCAGTGCACCTCTTTACCATGATCTTAAATCCTGAAATTGGTCCACATTTATCGGCCGAG
CGTGTCTATCACGATAATGCTTGGTTGCTCTACGCCCTGTTGCTGCCCGCGGTCGTCATCCACGCCATGATTGGTTTATA
CCGAGTGGCGGTTAAGTGGGGCATCACGACCCAGCGCTCCGGCTTACGTAAGCTTGCTAAGGTATTGATTATCTATTTGT
TATGCCTAGGTGGTGCGAGCTTAGTCTCCTATATGTTTATCGGTAGTGAGCTAAGTGTGCCGGTGCAGCCTTATGTGCCC
CATTGA

Upstream 100 bases:

>100_bases
CCTCACGCTTTAAATCTGTGACACTCAGCCGCGTTTTTTGTTGCTGCTATGGTGTAGTTTGCAAAGAGGCGTCAACAAAC
CATTAAAGGGTAAAAGCAAG

Downstream 100 bases:

>100_bases
TTGAAATCCAATTCTGCTGCGTTTATCCCTGATGGATTTGGGCGCAGCAGGATTTTGTTTCGCTGCTAATATTTAAGCAT
TCGATTAATTATTCGCCTCC

Product: fumarate reductase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MTSVTRVHTSVKTQGIGHPWSAKADRLQSATGIMLGCFLLLHMHFESSILLGKEAFYHVVQLLEGGMFSSTGHGFPIVTK
VFSVFMLLVVILHAAVALRRFPAQLGQWRALRSHLGGIKHRDTHAWFWQLITGFILFFLVPVHLFTMILNPEIGPHLSAE
RVYHDNAWLLYALLLPAVVIHAMIGLYRVAVKWGITTQRSGLRKLAKVLIIYLLCLGGASLVSYMFIGSELSVPVQPYVP
H

Sequences:

>Translated_241_residues
MTSVTRVHTSVKTQGIGHPWSAKADRLQSATGIMLGCFLLLHMHFESSILLGKEAFYHVVQLLEGGMFSSTGHGFPIVTK
VFSVFMLLVVILHAAVALRRFPAQLGQWRALRSHLGGIKHRDTHAWFWQLITGFILFFLVPVHLFTMILNPEIGPHLSAE
RVYHDNAWLLYALLLPAVVIHAMIGLYRVAVKWGITTQRSGLRKLAKVLIIYLLCLGGASLVSYMFIGSELSVPVQPYVP
H
>Mature_240_residues
TSVTRVHTSVKTQGIGHPWSAKADRLQSATGIMLGCFLLLHMHFESSILLGKEAFYHVVQLLEGGMFSSTGHGFPIVTKV
FSVFMLLVVILHAAVALRRFPAQLGQWRALRSHLGGIKHRDTHAWFWQLITGFILFFLVPVHLFTMILNPEIGPHLSAER
VYHDNAWLLYALLLPAVVIHAMIGLYRVAVKWGITTQRSGLRKLAKVLIIYLLCLGGASLVSYMFIGSELSVPVQPYVPH

Specific function: Di-heme cytochrome of the fumarate reductase complex [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004224
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 26931; Mature: 26799

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure 
TSVTRVHTSVKTQGIGHPWSAKADRLQSATGIMLGCFLLLHMHFESSILLGKEAFYHVV
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLLEGGMFSSTGHGFPIVTKVFSVFMLLVVILHAAVALRRFPAQLGQWRALRSHLGGIKH
HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
RDTHAWFWQLITGFILFFLVPVHLFTMILNPEIGPHLSAERVYHDNAWLLYALLLPAVVI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCHHHHHHHHHHHHHH
HAMIGLYRVAVKWGITTQRSGLRKLAKVLIIYLLCLGGASLVSYMFIGSELSVPVQPYVP
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]