Click here to switch to the map view.

The map label for this gene is cph2 [H]

Identifier: 117918807

GI number: 117918807

Start: 384315

End: 386132

Strand: Direct

Name: cph2 [H]

Synonym: Shewana3_0350

Alternate gene names: 117918807

Gene position: 384315-386132 (Clockwise)

Preceding gene: 117918806

Following gene: 117918808

Centisome position: 7.73

GC content: 48.02

Gene sequence:

>1818_bases
ATGAAGCATCGTAATCATTCCATCAGCCACAGGATGACGCTCACTATTATTGGGGTGAGCTCGTTTTTTGCCGTCCTGAC
TATGTTGGTGCAGTTGGTATGGAACTATCAGGAGAGCATAGATAAGGCCACGGCAGATATTCGTGAGTATTCCGAGTCTA
TCTTGCCTAGCATTGCTAAGTCGCTCTGGGATGTCGACCATAGCCTGTTATCCGATCTGTTGTCGGGTTTAGGGATGATG
CCCATGGTCTCGAGTGTCAATCTCGAAAGTGTCGATGGTGTGACTATGCAGTTAGGTAAGTCCTTAGGTGCGCAGGAGGA
CAACCAAACTTCGTTTCATTATCCGATTATGTATCAAGAGCAGCGGATTGGCTCACTCACCGTTGGTCTGGACACCAATA
AGCTGTATTACGAATTATGGCAGCAGTTGATTATCATCGTCCTCGGCAATGGCCTTAAAACCCTGCTGATGATTTACCTG
ATCCTCACTATGGTGCGTTTATTGGTGACCAACCGATTGTCGGCACTGGAGCGGTTTGCCAATCAAATCAATTTGAATTC
ATTACCCAAACTGAAAGTGCCCATCAGTGTAGTGACTAGCCAAGATGAAATTGGCCATGTAGCGCAATCGCTACAGGCCA
TGTATCAGCGCATTCGCAATGACTTAGCCATTAACAAACGTCAGGGGCGCGAATTACAACAGCAGCAGAATCAGTTGGCG
CGTTTAGTCGACGAACGAACTCAAGAGCTTAATTGGCAATCCCAGGCGAATCAGTTATTAGCCGAGATGTCATTGCAGTT
TTTAACCACAGATACCTCGCAACTGGATGAATGCCTCGCCGATGCCTGCCATCGCATTGGACTGTTATTCGATGTTGAAC
GGGTCAGTATTATTGAGTTTACCCAGCGCTACGCCAATTATCGTAGCTTTTGGAGCTGCGAGTCGCAGGCAAATCAGATC
CAAGATATCTCAGTCGATAGTGTTGCCGTGCTGGCACAAAAGTTTGTGTCGGAGTCGACGTTAGTCATCGAATCGATTGA
TTTTTTAGAGCGTGAGTCTCCTACGGAATACCAAGCGCTGCGCTCGGTTGGGATTTGTTCTATCGCCGCATTTGCGATTA
AAAATGCCAATGAATTACTCGGTTTACTCTCTCTTTCCATGGTGAGCCGTCCATTAAATTGGAATCCACAAAAGAAGGTG
ATGCTGACTCAATTTGCGGCGGCTCTGAACGAATTATTACTGCGTGAGGAAAAAGAGCGACAGATGCTCAGCCTGCAACA
GGCTTTAGTGTCGGTGAATGCTCAACTACGTGTGATGGCCGAAACCGATGAGTTGACTGGTTTAAGCAATCGTCGCCCTT
TTACTCATACTTTGGAAACCTTGCTCCAACAAGCTAAACCCGTGGGGTTGCTGATGTTGGATGTCGATTACTTTAAGAGT
TACAACGACACTTACGGTCACCTCGAAGGCGATGCGGCGCTTAGATTGGTTGCGCAGGCGCTCAAACAGTGTGATGTCTT
GCCGCAGGATAGTTTGCTGGCTCGAATCGGTGGCGAAGAGTTTGCGATTATTCTTGAGCAGATAACGCCTATCCAATTGG
AGGCCATAGCCAACCAACTCTGCTATCGAGTCGCCGCCTTGGATATTCCCCATCGTAGCTCTCCCAAGGGCAAAATTACC
CTCAGCATTGGTGGCGTGTATCTCCCCTTAGATACAAGCGTTCGCGGTTTTACCCTCTCTGAGGTGCTGCGCCGGGCCGA
TATTTGTTTGTACCGCGCCAAAGAGCAAGGACGCAATACTGTGGTCATCGAATCGTAA

Upstream 100 bases:

>100_bases
TCAGACTTTTCTCGCATGTTAGTGGCAAGGGATTGGTCGGCAATTTTCCAATCCCAAATCTTGGATAAGTTGCCACCGCA
ATAATAACGAATAGGTATCC

Downstream 100 bases:

>100_bases
ACTGCCTCGAGACTTTGCCTCAAGACTTGCTAAGTTACTGTTGATTAAGGCTCGCCTCAACGTGTTTGCAACCTAGCCGT
GGCGGCAGATTTATTTCTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MKHRNHSISHRMTLTIIGVSSFFAVLTMLVQLVWNYQESIDKATADIREYSESILPSIAKSLWDVDHSLLSDLLSGLGMM
PMVSSVNLESVDGVTMQLGKSLGAQEDNQTSFHYPIMYQEQRIGSLTVGLDTNKLYYELWQQLIIIVLGNGLKTLLMIYL
ILTMVRLLVTNRLSALERFANQINLNSLPKLKVPISVVTSQDEIGHVAQSLQAMYQRIRNDLAINKRQGRELQQQQNQLA
RLVDERTQELNWQSQANQLLAEMSLQFLTTDTSQLDECLADACHRIGLLFDVERVSIIEFTQRYANYRSFWSCESQANQI
QDISVDSVAVLAQKFVSESTLVIESIDFLERESPTEYQALRSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKV
MLTQFAAALNELLLREEKERQMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKS
YNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQLCYRVAALDIPHRSSPKGKIT
LSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNTVVIES

Sequences:

>Translated_605_residues
MKHRNHSISHRMTLTIIGVSSFFAVLTMLVQLVWNYQESIDKATADIREYSESILPSIAKSLWDVDHSLLSDLLSGLGMM
PMVSSVNLESVDGVTMQLGKSLGAQEDNQTSFHYPIMYQEQRIGSLTVGLDTNKLYYELWQQLIIIVLGNGLKTLLMIYL
ILTMVRLLVTNRLSALERFANQINLNSLPKLKVPISVVTSQDEIGHVAQSLQAMYQRIRNDLAINKRQGRELQQQQNQLA
RLVDERTQELNWQSQANQLLAEMSLQFLTTDTSQLDECLADACHRIGLLFDVERVSIIEFTQRYANYRSFWSCESQANQI
QDISVDSVAVLAQKFVSESTLVIESIDFLERESPTEYQALRSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKV
MLTQFAAALNELLLREEKERQMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKS
YNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQLCYRVAALDIPHRSSPKGKIT
LSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNTVVIES
>Mature_605_residues
MKHRNHSISHRMTLTIIGVSSFFAVLTMLVQLVWNYQESIDKATADIREYSESILPSIAKSLWDVDHSLLSDLLSGLGMM
PMVSSVNLESVDGVTMQLGKSLGAQEDNQTSFHYPIMYQEQRIGSLTVGLDTNKLYYELWQQLIIIVLGNGLKTLLMIYL
ILTMVRLLVTNRLSALERFANQINLNSLPKLKVPISVVTSQDEIGHVAQSLQAMYQRIRNDLAINKRQGRELQQQQNQLA
RLVDERTQELNWQSQANQLLAEMSLQFLTTDTSQLDECLADACHRIGLLFDVERVSIIEFTQRYANYRSFWSCESQANQI
QDISVDSVAVLAQKFVSESTLVIESIDFLERESPTEYQALRSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKV
MLTQFAAALNELLLREEKERQMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKS
YNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQLCYRVAALDIPHRSSPKGKIT
LSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNTVVIES

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=182, Percent_Identity=36.2637362637363, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=35.672514619883, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=36.9942196531792, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=186, Percent_Identity=32.258064516129, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1788956, Length=199, Percent_Identity=33.6683417085427, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1787816, Length=191, Percent_Identity=32.9842931937173, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=169, Percent_Identity=31.9526627218935, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=35.5828220858896, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=32.5153374233129, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=32.0224719101124, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=271, Percent_Identity=25.4612546125461, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=28.4974093264249, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 68128; Mature: 68128

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50885 HAMP ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHRNHSISHRMTLTIIGVSSFFAVLTMLVQLVWNYQESIDKATADIREYSESILPSIAK
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLWDVDHSLLSDLLSGLGMMPMVSSVNLESVDGVTMQLGKSLGAQEDNQTSFHYPIMYQE
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCEEEEC
QRIGSLTVGLDTNKLYYELWQQLIIIVLGNGLKTLLMIYLILTMVRLLVTNRLSALERFA
CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQINLNSLPKLKVPISVVTSQDEIGHVAQSLQAMYQRIRNDLAINKRQGRELQQQQNQLA
HHCCCCCCCCEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHH
RLVDERTQELNWQSQANQLLAEMSLQFLTTDTSQLDECLADACHRIGLLFDVERVSIIEF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEHHHHHHHHH
TQRYANYRSFWSCESQANQIQDISVDSVAVLAQKFVSESTLVIESIDFLERESPTEYQAL
HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
RSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKVMLTQFAAALNELLLREEKER
HHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKS
HHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHC
YNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
CYRVAALDIPHRSSPKGKITLSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNT
HHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
VVIES
EEEEC
>Mature Secondary Structure
MKHRNHSISHRMTLTIIGVSSFFAVLTMLVQLVWNYQESIDKATADIREYSESILPSIAK
CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLWDVDHSLLSDLLSGLGMMPMVSSVNLESVDGVTMQLGKSLGAQEDNQTSFHYPIMYQE
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCEEEEC
QRIGSLTVGLDTNKLYYELWQQLIIIVLGNGLKTLLMIYLILTMVRLLVTNRLSALERFA
CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQINLNSLPKLKVPISVVTSQDEIGHVAQSLQAMYQRIRNDLAINKRQGRELQQQQNQLA
HHCCCCCCCCEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHH
RLVDERTQELNWQSQANQLLAEMSLQFLTTDTSQLDECLADACHRIGLLFDVERVSIIEF
HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHEEHHHHHHHHH
TQRYANYRSFWSCESQANQIQDISVDSVAVLAQKFVSESTLVIESIDFLERESPTEYQAL
HHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHH
RSVGICSIAAFAIKNANELLGLLSLSMVSRPLNWNPQKKVMLTQFAAALNELLLREEKER
HHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QMLSLQQALVSVNAQLRVMAETDELTGLSNRRPFTHTLETLLQQAKPVGLLMLDVDYFKS
HHHHHHHHHHHCCCEEEEEEECHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHHHC
YNDTYGHLEGDAALRLVAQALKQCDVLPQDSLLARIGGEEFAIILEQITPIQLEAIANQL
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
CYRVAALDIPHRSSPKGKITLSIGGVYLPLDTSVRGFTLSEVLRRADICLYRAKEQGRNT
HHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
VVIES
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]