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The map label for this gene is alsB [C]

Identifier: 117918806

GI number: 117918806

Start: 383252

End: 384298

Strand: Direct

Name: alsB [C]

Synonym: Shewana3_0349

Alternate gene names: 117918806

Gene position: 383252-384298 (Clockwise)

Preceding gene: 117918798

Following gene: 117918807

Centisome position: 7.71

GC content: 45.65

Gene sequence:

>1047_bases
ATGGTCGAGGAGTACTCGCCTTTGCGTCTATGGTGCTTAACCTGTTTATTTATTGGCATATTGTTTTCTGCTATGCCAGC
ATGGGCCAAACTCGATGTGGCGTTTTTCAATCCCGGTGCCGAGGCCGATAGCTTTTGGGGTGATGTCGACAAATTAATGT
GGGTGGCCTCAGCAAAACTCGACATTAATTTGCAAATTATCCATTCAGATCGCAATCATTTTAAAATGATTAGCCAGTTA
GACTCTTTATTAAAATCGCAACAATCCCTTCCTAATCAGGTTATTTTGGTTAATGAGAAGCAGTCAGCATTAAAAATGTT
GCAGATGCTTTATCACCATCCCATTTATGTGCAGCTTATATTGAATGATATTTCCGTGGCCGAACGGGAAATGCTATTGC
AAGATCCCCACTGGCAGACCTATTTATTGCCCGCCATTATGCCCGATAACTATGCTATCGGAGCCGAGACCGCTAAAGCT
TTGTTAACGGGGTTAGACGTTAAAAAAGCTAAGGTTTTATTGATCTCGGGCGATAAGTCCACGCCCGCATCTGTTCTGCG
GACTCAGGGCGCCAACGATTATTTCTTTATGCAACCCAATGTGACAGTCACACAAACGGTTTATGGCCAATGGAGTGAGG
ATATTGCCTATGGGCAAGCATTGACGCTGCTGACCCGTTATCCCGATTTAAAGCTGATTTGGACCGCAAGTGACAGAATG
GCGATGGGGGTAATTAAAGCATTGAAGGAAAAAGGGCTCAACCCTGGGCGAGACGTGTTGGTGAGCTCTGTAAATACGTC
CGCCGAGATTTTACGACTCCGTCAGGAGCAACAACTCAGTGTACTCGGTGGTGGGCATTTTTTAGCGGGCGCATTGGGGT
TAGTGCAACTGCAACATTATCAGGCGACAGGGCAATATTATCCCTACGATAAGGTCCAGTTATTCAGCGTGCTTGAGCCA
AGCTCAGACTTTTCTCGCATGTTAGTGGCAAGGGATTGGTCGGCAATTTTCCAATCCCAAATCTTGGATAAGTTGCCACC
GCAATAA

Upstream 100 bases:

>100_bases
GATTGATTGCCTGTATCGGGCATAAATTTTTATGCGGTAACACGGTTGTGAATCGATAATAAGAAAGTGACCTCTGGTGA
CGGATCACATGTGGGGAAAC

Downstream 100 bases:

>100_bases
TAACGAATAGGTATCCATGAAGCATCGTAATCATTCCATCAGCCACAGGATGACGCTCACTATTATTGGGGTGAGCTCGT
TTTTTGCCGTCCTGACTATG

Product: periplasmic sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: Sugar ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MVEEYSPLRLWCLTCLFIGILFSAMPAWAKLDVAFFNPGAEADSFWGDVDKLMWVASAKLDINLQIIHSDRNHFKMISQL
DSLLKSQQSLPNQVILVNEKQSALKMLQMLYHHPIYVQLILNDISVAEREMLLQDPHWQTYLLPAIMPDNYAIGAETAKA
LLTGLDVKKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWSEDIAYGQALTLLTRYPDLKLIWTASDRM
AMGVIKALKEKGLNPGRDVLVSSVNTSAEILRLRQEQQLSVLGGGHFLAGALGLVQLQHYQATGQYYPYDKVQLFSVLEP
SSDFSRMLVARDWSAIFQSQILDKLPPQ

Sequences:

>Translated_348_residues
MVEEYSPLRLWCLTCLFIGILFSAMPAWAKLDVAFFNPGAEADSFWGDVDKLMWVASAKLDINLQIIHSDRNHFKMISQL
DSLLKSQQSLPNQVILVNEKQSALKMLQMLYHHPIYVQLILNDISVAEREMLLQDPHWQTYLLPAIMPDNYAIGAETAKA
LLTGLDVKKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWSEDIAYGQALTLLTRYPDLKLIWTASDRM
AMGVIKALKEKGLNPGRDVLVSSVNTSAEILRLRQEQQLSVLGGGHFLAGALGLVQLQHYQATGQYYPYDKVQLFSVLEP
SSDFSRMLVARDWSAIFQSQILDKLPPQ
>Mature_348_residues
MVEEYSPLRLWCLTCLFIGILFSAMPAWAKLDVAFFNPGAEADSFWGDVDKLMWVASAKLDINLQIIHSDRNHFKMISQL
DSLLKSQQSLPNQVILVNEKQSALKMLQMLYHHPIYVQLILNDISVAEREMLLQDPHWQTYLLPAIMPDNYAIGAETAKA
LLTGLDVKKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWSEDIAYGQALTLLTRYPDLKLIWTASDRM
AMGVIKALKEKGLNPGRDVLVSSVNTSAEILRLRQEQQLSVLGGGHFLAGALGLVQLQHYQATGQYYPYDKVQLFSVLEP
SSDFSRMLVARDWSAIFQSQILDKLPPQ

Specific function: Part Of The Binding-Protein-Dependent Transport System Alsbac For D-Allose. [C]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790526, Length=175, Percent_Identity=26.2857142857143, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39124; Mature: 39124

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEEYSPLRLWCLTCLFIGILFSAMPAWAKLDVAFFNPGAEADSFWGDVDKLMWVASAKL
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCEE
DINLQIIHSDRNHFKMISQLDSLLKSQQSLPNQVILVNEKQSALKMLQMLYHHPIYVQLI
EEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCEEEEEE
LNDISVAEREMLLQDPHWQTYLLPAIMPDNYAIGAETAKALLTGLDVKKAKVLLISGDKS
EHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCC
TPASVLRTQGANDYFFMQPNVTVTQTVYGQWSEDIAYGQALTLLTRYPDLKLIWTASDRM
CHHHHHHHCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHH
AMGVIKALKEKGLNPGRDVLVSSVNTSAEILRLRQEQQLSVLGGGHFLAGALGLVQLQHY
HHHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QATGQYYPYDKVQLFSVLEPSSDFSRMLVARDWSAIFQSQILDKLPPQ
HCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVEEYSPLRLWCLTCLFIGILFSAMPAWAKLDVAFFNPGAEADSFWGDVDKLMWVASAKL
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHCCEE
DINLQIIHSDRNHFKMISQLDSLLKSQQSLPNQVILVNEKQSALKMLQMLYHHPIYVQLI
EEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCEEEEEE
LNDISVAEREMLLQDPHWQTYLLPAIMPDNYAIGAETAKALLTGLDVKKAKVLLISGDKS
EHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCC
TPASVLRTQGANDYFFMQPNVTVTQTVYGQWSEDIAYGQALTLLTRYPDLKLIWTASDRM
CHHHHHHHCCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHH
AMGVIKALKEKGLNPGRDVLVSSVNTSAEILRLRQEQQLSVLGGGHFLAGALGLVQLQHY
HHHHHHHHHHCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
QATGQYYPYDKVQLFSVLEPSSDFSRMLVARDWSAIFQSQILDKLPPQ
HCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA